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1 Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji [email protected] Department of Chemistry, Yazd University [email protected] 2

Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji [email protected] Department of Chemistry, Yazd University [email protected]

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Page 1: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

2/9/2015

1

Inorganic Chemistry 2

An introduction to

Coordination Chemistry

Alireza [email protected]

Department of Chemistry, Yazd University

[email protected]

2

Page 2: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

2/9/2015

2

Coordination Chemistry

Alfred Werner1866-1919

Nobel prize 1913

[email protected]

3

Transition Metals فلزات واسطه

20_432

Sc

Y

La*

Ac†

Ti

Zr

Hf

Unq

V

Nb

Ta

Unp

Cr

Mo

W

Unh

Mn

Tc

Re

Fe

Ru

Os

Co

Rh

Ir

Ni

Pd

Pt

Cu

Ag

Au

Zn

Cd

Hg

Ce

Th

Pr

Pa

Nd

U

Pm

Np

Sm

Pu

Eu

Am

Gd

Cm

Tb

Bk

Dy

Cf

Ho

Es

Er

Fm

Tm

Md

Yb

No

Lu

Lr

d-block transition elements

*Lanthanides

†Actinides

f-block t ransition elemen ts

Uns Uno Une Uun Uuu

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4

Page 4: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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[email protected]

7

A neutral molecule or ion having a lone electron

pair (Lewis base B) that can be used to form a

bond to a metal ion (Lewis acid A).

Coordination compounds

Complexes

A + :B A-BA Metal atom or Metal ion

B Ligand (nutral molecule or ion)

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Page 5: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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A complex consists of a central atom, which is

usually a metal atom or ion, and attached groups

called ligands

Terminology for Complexes

The coordination

number is the total

number of points at

which a central atom

or ion attaches

ligands

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Terminology for Complexes

The region surrounding the central atom or ion and

containing the ligands is called the coordination sphere

A substance

consisting of one or

more complexes is

called a

coordination

compound

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Terminology for Complexes

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Terminology for Complexes

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Constitution and Isomerism ساختار و ایزومری

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[email protected] 14

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15

Linear [email protected]

[email protected] 16

Page 9: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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17

Tetrahedral [email protected]

18Square Planar Complexes

[email protected]

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[email protected] 19

Coordination Number: 5

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N

NH NH

N

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Myoglobin, a protein that stores O2 in cells

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Page 12: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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Coordination Environment of Fe2+ in Oxymyoglobin and

Oxyhemoglobin

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[email protected]

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[email protected] 25

[email protected] 26

Trigonal-Prismatic Complexes

Page 14: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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[email protected] 27

Distortion from Octahedral Geometry

Tetragonal distortion

Rhombic

distortion

Trigonal

distortion

Elongation

Compression

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7

9 12

Page 15: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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[email protected] 29

8

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Page 16: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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[email protected]

– Ligands

• Ligands are often organic molecules with IUPAC names

• Common names are most often used for the ligands in coordination compounds

• Chelate = Greek for Claw = a ligand that can bind a metal ion by more than one point of attachment. – Bidentate = “two teeth” = NH2CH2CH2NH2 = ethylenediamene = en

– Tridentate = NH2CH2CH2NHCH2CH2NH2 = diethylenetriamine = trien

– Tetradentate = cyclam

• lists common ligands, names, structures, and abbreviations

Nomenclature of Coordination Complexes

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[email protected]

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Page 18: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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Polydentate refers to multiple points of attachment by one ligand

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[email protected] 36

Page 19: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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Transition

Metal

Name if in Cationic

Complex

Name if in Anionic

Complex

Sc scandium scandate

Ti titanium titanate

V vanadium vanadate

Cr chromium chromate

Mn manganese manganate

Fe iron ferrate

Co cobalt cobaltate

Ni nickel nickelate

Cu copper cuprate

Zn zinc zincate

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[email protected] 38

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[email protected] 39

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Page 21: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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1. The cation comes first, then the anion(s)– diamminesilver(I) chloride [Ag(NH3)2]Cl

– potassium hexacyanoferrate(III) K3[Fe(CN)6]

2. Inner Sphere Complex Ion is enclosed in brackets– Ligands are named before the metal

– Metal is written first in the formula

– A space only between cation and anion

– No capitalization is needed

» tetraamminecopper(II) sulfate [Cu(NH3)4]SO4

» hexaamminecobalt(III) chloride [Co(NH3)6]Cl3

3. Prefixes denote the number of each ligand type. Special prefixes and parentheses are used if the ligand already contains a prefix.2 di bis 6 hexa hexakis

3 Tri tris 7 hepta heptakis

4 tetra tetrakis 8 octa octakis

5 penta pentakis 9 nona nonakis

10 deca decakis

Nomenclature of Coordination Complexes

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– dichlorobis(ethylenediamine)cobalt(III) fluoride [Co(en)2Cl2]F

– tris(bipyridine)iron(II) chloride [Fe(bipy)3]Cl2

4)Ligands are named in alphabetical order not counting prefixes.– tetraamminedichlorocobalt(III) ion [Co(NH3)4Cl2]

+

– amminebromochloromethylamineplatinum(II) [Pt(NH3)BrCl(CH3NH2)]

5)Ligand name alterations:– Anionic ligands are given an -o suffix: chloro, flouro, oxo, sulfato

- Neutral ligands keep their name: methylamine, bipyridine

– Water becomes aqua

– NH3 becomes ammine to keep separate from alkylamines

6)Two systems for showing charge or oxidation state of metal ion– Stock system: oxidation state in Roman Numerals in parenthesis after the metal

ion name. This is the most common method.

– Ewing-Basset system: charge of the total complex ion is placed in parenthesis

after the name of the metal ion.

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Page 22: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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Both systems add –ate to the metal name if the complex ion has an overall (-) charge

[Pt(NH3)4]2+ = tetraammineplatinum(II) ion or (2+)

[PtCl4]2- = tetrachloroplatinate(II) ion or (2-)

[PtCl6]2- = hexachloroplatinate(IV) ion or (2-)

7)Isomer designations come before the rest of the name and in italics

– cis-diamminedichloroplatinum(II)

– trans-diamminedichloroplatinum(II)

8) Bridging ligands have the prefix m

[(NH3)4Co(OH)(NH2)Co(NH3)4]4+ =

-amido--hydroxobis(tetraamminecobalt(III)) ion

9)Negatively charged complexes of certain metals use their Latin names:

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K2[Co(NH3)2Cl4]

potassium diamminetetrachlorocobaltate(II)

[Co(NH3)4Cl2]Cl

tetraamminedichlorocobalt(III) chloride

[Co(NH3)4Cl2]+

tetraamminedichlorocobalt(III) ion

[Ru(NH3)4(HSO3)2]tetraaminebis(bisulfito)ruthenium(II)

[Ti(H2O)6][CoCl6]hexaaquatitanium(III)hexachlorocobaltate(III)

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Page 23: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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K3[Fe(CN)6]

potassium hexacyanoferrate(III)

[Fe(CN)6]3-

hexacyanoferrate(III) ion

[Co(NH3)6]3+

[Fe(SCN)6]3-

[Co(en)3]3+

[Cr(C2O4)3]3-

[Fe(NH3)4(o-phen)]3+

[Fe(EDTA)]-1

[Co(EDTA)]-1

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[email protected]

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Page 24: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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[email protected] 47

20_441

Isomers

(same formula but different properties)

Stereoisomers

(same bonds, different

spatial arrangements)

Structural

isomers

(different bonds)

Optical

isomerism

Geometric

(cis-trans)

isomerism

Linkage

isomerism

Coordination

isomerism

Isomerism ایزومری

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Coordination Isomerism ایزومری کوئوردیناسیون

[Co(NH3)6][Cr(CN)6]

hexaaminecobalt(III) hexacyanochromate(III)

[Cr(NH3)6][Co(CN)6]hexaaminechromium(III) hexacyanocobaltate(III)

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Ionization Isomerism ایزومری یونش

[CrSO4(NH3)5]Cl

[CrCl(NH3)5]SO4

pentaaminsulfatochromium(III) chloride

pentaaminchlorochromium(III) sulfate

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Hydrated Isomerism ایزومری آب پوشی

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[Co(NH3)4(NO2)Cl]Cl & [Co(NH3)4(ONO)Cl]Cl

[Co(SCN)(NH3)5]+ & [Co(NCS)(NH3)5]

+

Ambidentate Ligands لیگاندهای دوسردندانه

NCS- NO2- R-CONH2

Linkage Isomerism ایزومری اتصال

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[email protected]

[Co(NH3)5(NO2)]Cl2Pentaamminenitrocobalt(III) chloride

[Co(NH3)5(ONO)]Cl2Pentaamminenitritocobalt(III) chloride

Linkage Isomerism ایزومری اتصال

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Page 29: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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[email protected] 57

[email protected] 58

Page 30: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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20_441

Isomers

(same formula but different properties)

Stereoisomers

(same bonds, different

spatial arrangements)

Structural

isomers

(different bonds)

Optical

isomerism

Geometric

(cis-trans)

isomerism

Linkage

isomerism

Coordination

isomerism

Isomerism ایزومری

[email protected] 59

Stereoisomerism استریوایزومری

1- Geometric isomerism

1. Geometric isomerism (cis-trans):

Pt(NH3)2Cl2

2. Geometric isomerism (fac-mer):

IrH3(PR3)3

– Atoms or groups arranged differently spatially relative to metal ion

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Page 31: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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Geometric Isomerism ایزومری هندسی

cis-trans ترانس–سیس

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[email protected] 63

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ML3X3•fac (facial) وجهی

three identical ligands occupying the

corners of a common triangular

•mer (meridional) کمربندی

three identical ligands occupying three

consecutive corners of a square plane

Geometric Isomerism ایزومری هندسی

fac-mer کمربندی –وجهی

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IrH3(PMe3) 3

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تحمیل ایزومری به وسیله لیگاند

fac فقط mer فقط [email protected]

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Each of the two

molecules or ions of

an optical isomer is

called an

enantiomer and each

enantiomer rotates

the plane-polarized

light in opposite

directions

2- StereoisomerismStereoisomerism استریوایزومری

2- Optical isomerism نوری ایزومری

69

Sn S1= S2=iCn Dn

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Optical Activity فعالیت نوری

Optical isomers are isomers that differ in their

ability to rotate the plane of polarized light

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• Different all ligands

• Tris bidentate chelate

• cis bis bidentate chelate

• Chiral organic ligand

• …

• …

• …

Chiral Complexes

Sn S1= S2=i

Cn Dn

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Optical Isomerism نوریایزومری

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Optical Isomerism نوریایزومری

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[email protected]

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Presentation of [M(en)3]

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EnantiomerDiasteriomer

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Complex-Ion Equilibria

Kf = [[Zn(NH3)4]2+]

[Zn2+][NH3]4 = 4.1*108

Zn2+(aq) + 4 NH3(aq) [Zn(NH3)4]2+(aq)

[Zn(H2O)4]2+(aq) + NH3(aq) [Zn(H2O)3(NH3)]2+(aq) + H2O(aq)

K1= [[Zn(H2O)3(NH3)]2+]

[[Zn(H2O)4]2+][NH3]= 1 = 3.9*102

Displacement is stepwise from the hydrated ion:

Step 1:

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[Zn(H2O)3(NH3)]2+(aq) + NH3(aq) [Zn(H2O)2(NH3)2]2+(aq) + H2O(aq)

K2 = [[Zn(H2O)2(NH3)2]2+]

[[Zn(H2O)3(NH3)]2+][NH3]= 2.1*102

K = 2 =[[Zn(H2O)2(NH3)2]2+]

[[Zn(H2O)4]2+][NH3]2= K1 * K2 = 8.2*104

Step 2:

[Zn(H2O)4]2+(aq) + 2 NH3(aq) [Zn(H2O)2(NH3)2]2+(aq) + 2 H2O(aq)

Combining steps 1 and 2:

4 = K1 * K2 * K3 *K4 = [email protected]

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Kn+1اگر > Knستشد نشان دهنده تغییرات ساختاری یا تغییرات اسپینی ا

[Fe(OH2)6]2+ + bipy [Fe(OH2)4 (bipy)]2+ K1

[Fe(OH2)4 (bipy)]2+ + bipy [Fe(OH2)2 (bipy) 2]2+ K2

[Fe(OH2)2 (bipy) 2]2+ + bipy [Fe (bipy) 3]

2+ K3

K3 > K2

eg

t2g

eg

t2g

eg

t2g

K3K2

Kn+1اگر > Knستشد نشان دهنده تغییرات ساختاری یا اسپینی ا

[Cd(OH2)6]2+ + Br-

[Cd(OH2)5 Br] + K1

[Cd(OH2)5 Br] + + Br- [Cd(OH2)4 Br2] K2

[Cd(OH2)4 Br2] + Br- [Cd(OH2)3 Br3]

- K3

[Cd(OH2)3 Br3]- + Br-

[CdBr4]2- K4

logK1=1.56 > logK2=0.54 > logK3=0.06 <logK4=0.37

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Irving Williams Seies

Fig is obtained when log Kf is plotted for comps. of the M2+ ions

of the first series. This variation is summarized by the Irving-

Williams series for the order of formation constants. For M2+:

Ba2+ < Sr2+ < Ca2+ < Mg2+ < Mn2+ < Fe2+ < Co2+ < Ni2+ < Cu2+ > Zn2+

The order is relatively insensitive to the choise of ligands

The series reflects electrostatic effects.

However, beyond Mn2+ there is a sharp

increase in the value of Kf for Fe(II),

d6, Co(II), d7, Ni(II) d8,and Cu(II) d9.

These ions experince an additional

stabilization proportional to the LFSE.

Tetragoanally distorted Cu(II) enhances

the stabilization of [email protected]

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Chelate Effect

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Macrocyclic Ligands

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Page 48: Inorganic Chemistry 2 - Yazd · Inorganic Chemistry 2 An introduction to Coordination Chemistry Alireza Gorji agorji@yazd.ac.ir Department of Chemistry, Yazd University agorji@yazd.ac.ir

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Acid-Base Reactions of Complex Ions

[Fe(H2O)6]3+(aq) + H2O(aq) [Fe(H2O)5(OH)]2+(aq) + H3O+(aq)

Ka1 = 9*10-4

[Fe(H2O)5(OH)]2+ (aq) + H2O(aq) [Fe(H2O)4(OH)2]2+(aq) + H3O+(aq)

Ka2 = 5*10-4

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