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http://informahealthcare.com/hemISSN: 0363-0269 (print), 1532-432X (electronic)
Hemoglobin, Early Online: 1–5! 2014 Informa Healthcare USA, Inc. DOI: 10.3109/03630269.2014.912661
ORIGINAL ARTICLE
Molecular Update of b-Thalassemia Mutations in the Syrian Population:Identification of Rare b-Thalassemia Mutations
Rami A. Jarjour, Hossam Murad, Faten Moasses, and Walid Al-Achkar
Human Genetics Division, Molecular Biology and Biotechnology Department, Atomic Energy Commission of Syria (AECS), Damascus, Syria
Abstract
b-Thalassemia (b-thal) is an autosomal recessive disorder characterized by variable degrees ofanemia, bone marrow hyperplasia, splenomegaly, and complications related to the severity ofthe anemic state. The b-thalassemias result from mutations in and around the b-globin gene(HBB) located as a cluster on the short arm of chromosome 11. In Syria, b-thal is highlyprevalent. The main aim of this study was to identify the frequency of HBB mutations in 189Syrian b-thal patients and carriers of b-thal. Out of the 189 patients and carriers recruited in thisstudy, 181 patients had at least one HBB mutation and eight patients did not show anymutation. The 10 most frequent ones constituted 77.5% of all HBB mutations. These mutationsin order of frequency were: IVS-I-110 (G4A) (17.0%), IVS-I-1 (G4A) (14.7%), codon 39 (C4T)(14.4%), IVS-II-1 (G4A) (9.8%), codon 8 (–AA) (6.2%), IVS-I-6 (T4C) (5.2%), IVS-I-5 (G4C) (4.9%),codon 5 (–C) (3.2%), IVS-I-5 (G4A) (3.2%) and codon 37 (G4A) (2.2%). Another 21 mutationswere less frequent or sporadic. These results provide important tools for adapting a prenatalmolecular diagnostic test for the Syrian population.
Keywords
b-Thalassemia (b-thal), HBB, mutation, Syria
History
Received 3 December 2013Revised 6 January 2014Accepted 8 January 2014Published online 14 May 2014
Introduction
b-Thalassemia (b-thal) is an autosomal recessive disorder
characterized by a reduced production of Hb A (a2b2), which
results from the reduced synthesis of b-globin chains relative
to a-globin chains, thus causing an imbalance in globin chain
production and hence abnormal erythropoiesis (1). The
disease reaches a high frequency in the Mediterreanian
Basin, Africa, the Middle East, the Indian subcontinent and
Southeast Asia (1). The b-thalassemias result from mutations
in and around the the b-globin gene (HBB) located as a
cluster on the short arm of chromosome 11. Absence of
b-globin causes b0-thal. Reduced amounts of detectable
b-globin causes b+-thal (2). Over 812 b variants have so far
been reported to HbVar (2). The thalassemia mutations result
in a decreased rate of production or an absence of the
b-globin chain of the hemoglobin (Hb) molecule and are
associated with variable degrees of anemia, bone marrow
hyperplasia, splenomegaly, and complications related to the
severity of the anemic state.
In Syria, Hb disorders are highly prevalent. There are more
than 8000 registered transfusion-dependent patients at 13
thalassemia centers in 14 provinces (3). The number of
patients is increasing by almost 800 each year. The prevalence
of b-thal trait in Syria has not yet been established but it is
expected to be approximately 6.0% of the population, with an
estimated 779,000 carriers (4).
The molecular basis of the HBB mutations may vary from
one population to another. To date, very few studies have dealt
with the molecular characterization of b-thal in Syria (5,6).
The main aim of this study was to identify the frequency of
HBB mutations in a number of Syrian patients with b-thal
(homozygotes and compound heterozygotes) and in a number
of b-thal carriers (heterozygotes) for premarital counseling.
Patients and methods
This study was conducted at the Human Genetics Division,
Atomic Energy Commission of Syria (AECS), Damascus,
Syria. A total of 189 unrelated b-thal patients and car-
riers were referred by their physicians for HBB mutation
detection, genetic counseling and premarital counseling.
All the b-thal patients and b-thal carriers were of Syrian
Arab origin.
DNA Extraction
For all patients, blood samples were collected in
EDTA-containing tubes and DNA was isolated from frozen
blood samples using Mini kit QIAamp DNA Blood (Qiagen,
Hilden, Germany) according to the manufacturer’s
instructions.
HBB mutation analysis was performed for 32 mutations
using a reverse hybridization assay (b-Globin StripAssay�
MED 4-120, 4-130 or 4-140; ViennaLab Diagnostics GmbH,
Address correspondence to Dr. Rami A. Jarjour, Human GeneticsDivision, Molecular Biology and Biotechnology Department, AtomicEnergy Commission of Syria (AECS), P.O. Box 6091, Damascus, Syria.Tel: +963-11-213-2580. Fax: +963-11-611-2289. E-mail: [email protected]
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Vienna, Austria) according to the manufacturer’s instructions.
When the reverse hybridization assay did not detect any
mutation in a thalassemia carrier or patient, or detected one
mutation in a thalassemia patient, sequencing was performed
on an ABI PRISM� 310 Genetic Analyzer (Applied
Biosystems, Foster City, CA, USA) using the BigDye�
Terminator v3.1 Cycle Sequencing Kit and conditions
suggested by the manufacturer. Two polymerase chain
reactions (PCRs) were performed. The first reaction
amplified 146 bp of the 50 untranslated region (50UTR), the
whole exon 1, intron 1 and exon 2, and 117 bp of the intron 2
region neighboring exon 2. The second reaction amplified
234 bp of the intron 2 region neighboring exon 3, the whole
exon 3 and 302 bp of the 30UTR (7). This analysis
fully sequenced the entire HBB gene but omitted a seg-
ment of 499 bp of intron 2 in between the two reactions,
which does not frequently contain HBB mutations (HbVar
database) (2).
Every patient was informed about the study and a
written consent was signed either by the patient or his/
her parent or guardian for blood sampling. This study has
been approved by the Institutional Review Board of the
AECS.
Results
Out of the 189 patients recruited for this study, 181 patients
had at least one HBB mutation and eight patients did not carry
any mutation (Table 1). The parents of 88 (49.0%) patients
proved to be consanguineous, the parents of 76 (42.0%) were
not consanguineous and no data were available for 17 (9.0%)
cases (Table 2).
A total of 31 different HBB mutations were identified in a
cohort of 181 thalassemia patients and carriers (Table 3). The
10 most frequent ones constituted 77.5% of all the HBB
mutations found. These mutations in order of frequency were:
IVS-I-110 (G4A) (17%), IVS-I-1 (G4A) (14.7%), codon 39
(C4T) (14.4%), IVS-II-1 (G4A) (9.8%), codon 8 (–AA)
(6.2%), IVS-I-6 (T4C) (5.2%), IVS-I-5 (G4C) (4.9%),
codon 5 (–C) (3.2%), IVS-I-5 (G4A) (3.2%) and codon 37
(G4A) (2.2%); another 21 mutations were less frequent or
sporadic (Table 3).
Different genotypes were identified in the 181 patients
(Table 1). There were 94 (52.0%) homozygous patients, 30
(17.0%) were compound heterozygotes and 57 (31.0%) were
heterozygotes. The most frequent mutations among the
homozygous patients were IVS-I-110, codon 39 and IVS-I-
1, while IVS-I-1 was the most common mutation among
heterozygous patients/carriers.
Table 1. Genotypes of 189 Syrian patients with b-thalassemia:homozygotes, compound heterozygotes and heterozygotes.
n Genotype n (%)
Homozygotes1 IVS-I-110(G4A)/IVS-I-110(G4A) 212 codon 39(C4T)/codon 39(C4T) 173 IVS-I-1(G4A)/IVS-I-1(G4A) 114 IVS-II-1(G4A)/IVS-II-1(G4A) 95 codon 8(–AA)/codon 8(–AA) 86 IVS-I-6(T4C)/IVS-I-6(T4C) 57 codon 5(–CT)/codon 5(–CT) 48 IVS-I-5(G4C)/IVS-I-5(G4C) 49 IVS-I-5(G4A)/IVS-I-5(G4A) 3
10 codon 37(G4A)/codon 37(G4A) 311 IVS-I-116(T4G)/IVS-I-116(T4G) 212 codon 44(–C)/codon 44(–C) 213 �30(T4A)/�30(T4A) 214 �87(C4G)/�87(C4G) 115 �88(C4T)/�88(C4T) 116 IVS-II-848(C4A)/IVS-II-848(C4A) 1subtotal 94 (52.0)
Compound Heterozygotes17 IVS-I-5(G4A)/IVS-I-1(G4A) 318 IVS-I-1(G4A)/IVS-II-1(G4A) 219 IVS-II-1(G4A)/codon 39(C4T) 220 IVS-I-6(T4C)/IVS-II-1(G4A) 221 IVS-I-6(T4C)/IVS-I-110(G4A) 222 IVS-I-5(G4A)/codon 39(C4T) 123 IVS-I-5(G4A)/IVS-II-1(G4A) 124 IVS-I-1(G4A)/IVS-I (�1)(G4A)
or codon 30(G4C)1
25 IVS-II-745(C4G)codon 5(–CT) 126 IVS-I-1(G4A)/IVS-I-110(G4A) 127 IVS-I-1(G4A)/codon 8(–AA) 128 IVS-I-1(G4A)/exon 3 deletiona 129 IVS-II-1(G4A)/codon 5(–CT) 130 IVS-II-1(G4A)/IVS-I-110(G4A) 131 IVS-I-5(G4C)/IVS-I-110(G4A) 132 �88(C4T)/codon 37(G4A) 133 �88(C4T)/codons 36/37(–T) 134 �87(C4G)/IVS-I-1(G4A) 135 �87(C4A)/IVS-I-110(G4A) 136 IVS-I-130(G4C)/codon 44(–C) 137 codon 39(C4T)/IVS-II-745(C4G) 138 codon 39(C4T)/IVS-II-1(G4A) 139 codon 15(G4A)/codon 8(–AA) 140 codon 15(G4A)/IVS-I-110(G4A) 1subtotal 30 (16.5)
Heterozygotes41 IVS-I-1(G4A) 1142 codon 5(–CT) 543 codon 39(C4T) 544 IVS-I-5(G4C) 545 IVS-II-1(G4A) 446 IVS-II-745(C4G) 347 IVS-I-110(G4A) 348 �30(T4A) 249 IVS-I-6(T4C) 250 �101(C4T) 251 IVS-I-130(G4C) 252 IVS-1, 25 bp deletion 253 codons 36/37(–T) 154 codons 8/9(+G) 155 codon 22 (7 bp deletion) 156 codon 8(–AA) 157 �87(C4G) 158 exon 3 deletiona 159 codon 47(+A) 160 codon 15(G4A) 161 +20(C4T) (50UTR) 1
(continued )
Table 1. Continued
n Genotype n (%)
62 codons 9/10(+T) 163 codons 82/83(–G) 1subtotal 57 (31.5)
Total number of patients with b-thal mutations 181 (100.0)Patients without any b-thal mutations 8Total number of patients studied 189
aThe breakpoint of this deletion could not be characterized.
2 R. A. Jarjour et al. Hemoglobin, Early Online: 1–5
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Discussion
Syria is a country in the Middle East, along the eastern shore
of the Mediterranean Sea. Ancient Syria was occupied
successively by Sumerians, Egyptians, Hittites, Assyrians,
Babylonians, Greeks, Persians and Romans. Moreover,
modern Syria was conquered by the Byzantines,
Arab Muslims, Mongols and Ottomans. Syria is very
diverse, ethnically and religiously, but most Syrians are
ethnic Arabs.
To the best of our knowledge, this is the most compre-
hensive study of b-thal in Syria. Our cohort of patients
included 189 patients and carriers. Moreover, we analyzed the
HBB mutations using a reverse hybridization assay and DNA
sequencing. Two previous studies have been published on
b-thal in Syria. In the first published study (5), 36 patients
were included and 14 HBB mutations were identified using
the amplification refractory mutation system (ARMS) and
confirmed by dot-blot analysis. The second study (6) included
82 patients and 10 HBB mutations were detected by ARMS
and RFLP (restriction fragment length polymorphism). The
samples that did not reveal any mutation by the ARMS and
restriction enzyme analysis approaches were then subjected to
denaturing gradient gel electrophoresis (DGGE) (6). It should
be noted that IVS-I-110 and IVS-I-1 are the most common
mutations in this study and the previous studies.
In this study, the frequency of 31 HBB mutations is
described in 189 unrelated Syrian patients suffering from
b-thal or carriers of b-thal. The heterogeneity of the Syrian
population is reflected in the wide range of HBB mutations.
Most of the mutations were of Mediterranean origin, while
some mutations were of Turkish, Kurdish, Egyptian, Asian
Table 3. The distribution of the 31 HBB mutations screened in Syrian patients with b-thalassemia.
Mutation Type Origin n (%)Syria(%)
Syrian (%)
Syria(%)
Lebanon(%)
Jordan(%)
Gazastrip (%)
Reference this study 6 5 2 8 9 10IVS-I-110 (G4A) b+ East Mediterranean 52 (15.7) 24.1 16 (44.0) 24.0 33.0 22.0 37.5IVS-I-1 (G4A) b0 Mediterranean 45 (13.5) 17.0 6 (16.6) 17.0 16.0 6.6 20.0codon 39 (C4T) b0 West Mediterranean 44 (13.3) 6.4 4 (11.1) 6.4 0.5 2.0 11.5IVS-II-1 (G4A) b0 Mediterranean 30 (9.1) 4.2 1 (2.8) 4.0 10.0 19.8 1.0codon 8 (–AA) b0 Turkish 19 (5.7) 0.7 – 0.7 2.5 – –IVS-I-6 (T4C) b+ West Mediterranean 16 (4.8) – – 4.0 15.0 6.6 7.5IVS-I-5 (G4C) b+ Asian Indian 15 (4.5) – – – 0.5 5.5 –codon 5 (–CT) b0 Mediterrranean 15 (4.5) – – 8.5 4.0 3.3 10.0IVS-I-5 (G4A) b+ Algerian 10 (3.0) – – – – – –codon 37 (G4A) b0 Saudi, Egyptian 7 (2.1) – – 1.4 – 8.8 1.0�30 (T4A) b+ Turkish 6 (1.8) 7.1 – 7.0 0.5 – –codon 44 (–C) b0 Kurdish 5 (1.5) – – – 1.0 – –IVS-II-745 (C4G) b+ Mediterranean 5 (1.5) 1.4 6 (16.6) 1.4 1.0 12.0 –�87 (C4G) b+ Mediterranean 4 (1.2) 2.1 – 2.0 1.5 2.0 –�88 (C4T) b+ Asian Indian 4 (1.2) – – 2.0 1.5 – –IVS-I-116 (T4G) b0 Mediterranean 4 (1.2) – – 1.4 – – –IVS-I-130 (G4C) b0 Japanese 3 (0.9) 0.7 – – – – –codon 15 (G4A) b0 Asian Indian 3 (0.9) – – 3.5 – – –�101 (C4T) b+ Turkish 2 (0.6) – – – – – –codons 36/37 (–T) b0 Kurdish, Iranian 2 (0.6) – – – – – –IVS-II-848 (C4A) b+ Egyptian 2 (0.6) – – – – 2.0 –IVS-I, 25 bp deletion b0 Asian Indian 2 (0.6) – – – 1.0 – –exon 3 deletiona NDb NDb 2 (0.6) – – – – – –codons 8/9 (+G) b0 Asian Indian 1 (0.3) 1.4 – – 0.5 – –codon 22 (7 bp deletion) b0 Turkish 1 (0.3) – – – – – –IVS-I (�1)(G4C) or codon 30 (G4C) b0 Bulgarian 1 (0.3) – – – – – –codon 47 (+A) b0 Surinamese 1 (0.3) – – – – – –+20 (C4T) 50UTR c Mediterranean 1 (0.3) – – – – – –codons 9/10 (+T) b0 Greek 1 (0.3) – – – – – –codons 82/83 b0 Azerbaijani 1 (0.3) – – – – – –�87 (C4A) b+ Argentinean 1 (0.3) – – – – – –unknown 26 (7.8)c – – – – – –Total 331 (100.0)d 100.0 36 (100.0)
ND: not determined.aThe breakpoint of this deletion could not be characterized.bThis mutation is an innocuous single nucleotide polymorphism (SNP) associated with the IVS-II-745 mutation in cis (29).cThis is the sum of 10 and 16 because one mutation only was identified in 10 patients (10 alleles) and no mutation was identified in eight patients
(16 alleles).dThe total number of alleles is not 378 (189 patients� 2) because of the presence of one mutation in a total of 47 carriers.
Table 2. Frequency of consanguinity between parents of b-thalassemiapatients in this study.
Consanguineous
Parents (%)
Non
Consanguineous
Parents (%)
No Data
Available
(%) Total (%)
Homozygotes 60 (64.0) 28 (30.0) 6 (6.0) 94 (100.0)
Heterozygotes 20 (35.0) 29 (51.0) 8 (14.0) 57 (100.0)
Compound
heterozygotes
8 (27.0) 19 (63.0) 3 (10.0) 30 (100.0)
Total number
of patients
88 (49.0) 76 (42.0) 17 (9.0) 181 (100.0)
DOI: 10.3109/03630269.2014.912661 Frequency of �-Thalassemia Mutations in Syria 3
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Indian, Greek and Azerbaijani origins. The Mediterranean
mutations [IVS-I-110, IVS-I-1, codon 39, IVS-II-1, codon 8,
IVS-I-6, IVS-I-5 (G4C), codon 5, IVS-I-5 (G4A), �30
(T4A), IVS-II-745 (C4G), �87 (C4G), and IVS-I-116
(T4G)] accounted for 81.5% of the mutations, while the
Asian Indian mutations [IVS-I-5 (G4C), �88 (C4T), codon
15 (G4A), IVS-I, 25 bp deletion, codons 8/9 (+G) and codon
47 (+A)] accounted for 8.3% of the rest of the mutations.
These findings (the high frequency of Mediterranean muta-
tions and the low frequency of Asian Indian mutations) are
similar to the findings obtained in the surrounding countries,
especially Lebanon (8), Jordan (9), the Gaza Strip (10) and
Iraq (11).
Although we noted a considerable heterogeneity of b-thal
mutations in Syria, we also estimate that more mutations
could potentially be present in the population. We could not
detect any b-thal mutation in eight patients using sequencing.
Sequencing the other parts of the HBB gene may help us
reveal the causative mutations in those patients.
Most of the mutations detected in this study can also be
found with varying frequencies in neighboring countries
(e.g. Lebanon, Jordan, Palestine and Iraq). This is in line with
studies in other parts of the world which have shown that gene
flow due to population migration is common. Moreover, most
of the patients in Syria and the neighboring countries are of
Arab origin. The most common mutations are IVS-I-110
(17.0%) and IVS-I-1 (14.7%). As for the IVS-I-110 mutation,
it has previously been shown that its frequency in Syria ranges
from 24.0 to 44.0% (5,6). However, this mutation was
overestimated in the previous studies compared with this
one. The IVS-I-110 mutant allele is frequent in Lebanon
(62.0%) (12), Egypt (57.0%) (13) Greece (42.0%) (14) and
Turkey (44.0%) (15). This mutation, which is believed to have
arisen in Turkey, is the most common mutation in the eastern
Mediterranean. This mutation has its highest frequency in
Cyprus, but its frequency gradually decreases in countries
further to the east, with a distribution pattern almost opposite
to that of IVS-II-1 (16). It has a high frequency in all
Mediterranean Arab countries (12.0–38.0%), but reaches
lower frequencies in countries around the Gulf (0.0–2.0%)
(8). However, the IVS-I-110 mutation is under represented in
the western part of the Mediterranean Basin, such as Spain
(8.5%) (17), Portugal (10.0%) (18) and is nearly absent in
Algeria (19), Tunisia (20) and Morocco (21).
The frequency of IVS-I-1 in this study was 14.7%, which is
slightly lower than what it has been previously reported to be
in Syria (17.0%) (5,6). The IVS-I-1 (Mediterranean b+)
mutation also has a high frequency on the Gaza strip (20.0%)
(22) and in Lebanon (15.0%) (12) with lower frequencies in
Gulf countries (1.0% in Oman and 3.0% in Bahrain) (8).
Codon 39 is the third most common mutation in our
studied cohort. The codon 39 (Mediterranean b0) mutation,
which is believed to be of Roman origin, is most common in
the Western Mediterranean Arab countries [27.0% in both
Tunisia (20) and Algeria (19)] and decreases towards the east
(8). However, this mutation also reaches a high frequency in
some countries of the Arabian Peninsula: 20.0% in Saudi
Arabia (23,24) and 24.0% in Bahrain (25).
IVS-II-1 is the most common mutation in northern
Iraq (Dahouk and Irbil) (26) and in Iran (34.0%) (27).
This mutation is also most common in Kuwait at a frequency
of 29.0% (28) and in the Eastern Province of Saudi Arabia
(27.0%) (24). IVS-II-1 was detected in all Arab countries
except Tunisia and Algeria, has a high frequency in North
Jordan (20.0%) and in Kuwait (29.0%) (8).
To the best of our knowledge, this is the first report that has
detected rare mutations such as codon 15, �101 (C4T),
codons 36/37 (–T), IVS-II-848 (C4A), IVS-I, 25 bp deletion,
codon 22 (7 bp deletion), IVS-I (�1) (G4A), codon 47, +20
(C4T) in the 50UTR (29), codons 9/10 (+T), codons 82/83
(–G) and �87 in the Syrian patients (Table 1).
There is a high consanguinity rate (49.0%) among the
parents of b-thal patients in this study cohort. Because of the
high consanguinity marriages, the homozygote frequency is
high in this study (64.0%) and the rate of IVS-I-110, IVS-I-1
and codon 39 homozygous mutations is high. The total rate of
consanguinity in Syria was found to be 35.4% (30). This
reflects that almost half of the marriages occur between
relatives. Public awareness of consanguineous marriage
should be increased via the mass media. Moreover, commu-
nity programs for premarital screening to detect carriers of
hemoglobinopathies such as thalassemia and sickle cell
anemia should be initiated. Premarital screening, aimed at
identifying carriers of Hb disorders, has recently been
established by the Syrian Medical Association and the
Ministry of Health.
In conclusion, this study identified a wider spectrum of
HBB mutations in Syrian patients compared to previously
published studies. These results provide important tools for
adapting a prenatal molecular diagnostic test for the Syrian
population. Despite efforts to develop gene therapy or bone
marrow transplantation, prenatal diagnosis followed by
termination of the affected fetus still remains the best form
of management at the present time.
Acknowledgements
We would like to thank Professor Ibrahim Othman, the
Director General of AECS, Damascus, Syria, and Dr. Nizar
MirAli, Head of Department, Damascus, Syria for their
support.
Declaration of interest
This project was financially supported by Atomic Energy
Commission of Syria (AECS). The authors report no conflicts
of interest. The authors alone are responsible for the content
and writing of this article.
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DOI: 10.3109/03630269.2014.912661 Frequency of �-Thalassemia Mutations in Syria 5
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