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Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50 Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49 E.coli -------MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQF-------------QEESE 40 Vibrio -------MS-IELDLQLAVENEHGLPSEAEFALWLTRTITPF-------------QAQAE 39 Haemophilus -------MGSVLVDLQIATENIEGLPTEEQIVQWATAAIQPE-------------GNEVE 40 Pseudomonas MGAARAVTMPLELDLQVAS-DAADLPSEAQFRAWCELALRQ--------------RAESE 45 Mycobacterium ---MREHLMSIEVANESG--IDVSEAELVSVARFVIAKMDVN--------------PCAE 41 Staphylococcus -------MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIE--------------DDAE 39 . . .. * Sinorhizobium LSLVFTDDQSIRAINAEWRGQDKATNVLSFPAFPVTPGR------MPGP-MLGDIVVAHE 103 Brucella LSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGS------QPGP-MLGDIVIARE 102 E.coli VTIRVVDTAESHSLNLTYRGKDKPTNVLSFP-FEVPPG-------MEMS-LLGDLVICRQ 91 Vibrio VTVRIVDEAESHALNLNYRGKDKPTNVLSFP-FEAPPG-------MEMD-LLGDLVICRQ 90 Haemophilus MTVRIVDEAESHELNLTYRGKDRPTNVLSFP-FECPDE-------VELP-LLGDLVICRQ 91 Pseudomonas LTIRLVDEAEGLELNSTYRHKDYATNVLSFP-ADVPEEF------LDIP-LLGDLVICAP 97 Mycobacterium LSMLLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPS-MLGDIVLCPE 100 Staphylococcus LSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDFSG--LDIPRVLGDIIICTD 97 ::: . * :: : *:*:**. :***:::. Sinorhizobium TLRREAAELEKPFDAHLTHLLVHGFLHLFGYDHIEDDEAERMEGLETRILARLGLSDPYG 163 Brucella TVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYA 162 E.coli VVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYI 151 Vibrio VVEREAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYL 150 Haemophilus VVEREAAEQEKPLMAHWAHMVVHGGLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYL 151 Pseudomonas VVAREAREQHKPLQAHWAHLVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYA 157 Mycobacterium FAAEQAAAAGHSLGHELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEEWVADQVEA 160 Staphylococcus VAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD-- 155 .:* :.: . : :** ***:**** : : * : :: Sinorhizobium DQPPH----------------- 168 Brucella VSDEDINND------------- 171 E.coli AEKE------------------ 155 Vibrio AEKE------------------ 154 Haemophilus AEK------------------- 154 Pseudomonas CDDEEPPSKEK----------- 168 Mycobacterium YQHDRQDEKDRRLLDKSRYFDL 182 Staphylococcus ---------------------- B. A. Figure S1

Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50 Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49

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Page 1: Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50 Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49

Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49E.coli -------MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQF-------------QEESE 40Vibrio -------MS-IELDLQLAVENEHGLPSEAEFALWLTRTITPF-------------QAQAE 39Haemophilus -------MGSVLVDLQIATENIEGLPTEEQIVQWATAAIQPE-------------GNEVE 40Pseudomonas MGAARAVTMPLELDLQVAS-DAADLPSEAQFRAWCELALRQ--------------RAESE 45Mycobacterium ---MREHLMSIEVANESG--IDVSEAELVSVARFVIAKMDVN--------------PCAE 41Staphylococcus -------MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIE--------------DDAE 39 . . .. *Sinorhizobium LSLVFTDDQSIRAINAEWRGQDKATNVLSFPAFPVTPGR------MPGP-MLGDIVVAHE 103Brucella LSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGS------QPGP-MLGDIVIARE 102E.coli VTIRVVDTAESHSLNLTYRGKDKPTNVLSFP-FEVPPG-------MEMS-LLGDLVICRQ 91Vibrio VTVRIVDEAESHALNLNYRGKDKPTNVLSFP-FEAPPG-------MEMD-LLGDLVICRQ 90Haemophilus MTVRIVDEAESHELNLTYRGKDRPTNVLSFP-FECPDE-------VELP-LLGDLVICRQ 91Pseudomonas LTIRLVDEAEGLELNSTYRHKDYATNVLSFP-ADVPEEF------LDIP-LLGDLVICAP 97Mycobacterium LSMLLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPS-MLGDIVLCPE 100Staphylococcus LSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDFSG--LDIPRVLGDIIICTD 97 ::: . * :: : *:*:**. :***:::. Sinorhizobium TLRREAAELEKPFDAHLTHLLVHGFLHLFGYDHIEDDEAERMEGLETRILARLGLSDPYG 163Brucella TVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYA 162E.coli VVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYI 151Vibrio VVEREAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYL 150Haemophilus VVEREAAEQEKPLMAHWAHMVVHGGLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYL 151Pseudomonas VVAREAREQHKPLQAHWAHLVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYA 157Mycobacterium FAAEQAAAAGHSLGHELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEEWVADQVEA 160Staphylococcus VAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD-- 155 .:* :.: . : :** ***:**** : : * : :: Sinorhizobium DQPPH----------------- 168Brucella VSDEDINND------------- 171E.coli AEKE------------------ 155Vibrio AEKE------------------ 154Haemophilus AEK------------------- 154Pseudomonas CDDEEPPSKEK----------- 168Mycobacterium YQHDRQDEKDRRLLDKSRYFDL 182Staphylococcus ---------------------- B.

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Page 2: Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50 Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49

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Page 3: Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50 Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49

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Page 4: Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50 Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49

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Figure S4

Page 5: Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50 Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49

Sra16>S melilotiAGGAATCTCAGAAGACGAAAGTTCTGCTCGTTGCGCGGCCGTGCTCAAGATTGACGACGATCGATATCGCCGCCATTGCGAGCGTTGCGGTGATGATGGCGCCTATTCCAAGAACAATCATTGTTCACGTCCCGTGGTGCACCGTCATGATGCCGCCCTGTGCCTGAAGATGCTACTCAACGCGTATTTCGCGCCATTACACCTGCATGTTTTGAATCGCAGACGACACAAGAAACATGCAGCACTTCAAATGCTCTAGCGACCTCTGCCCGTCCGATGAGAGACGCATGGCGCTGTATGCTTCGATACTGAACGGCAAGTAGATCCGCAATTCTAAACTCTCATCATTGAAAACCTGTGGCTGCGTTCAAAGAAAACGTTGCATCGATAGTGGACGGCAAAGCTCCGGTTGAATTTTAGCGATTCCGGTTAAGAGGCAGGAGGCATTAACTTTCAAGCAAGGAATTAACCATAAACATGGTCCAACACGTCGGAATAGGAAGTCTCGACTTCTCCTCAAGGCATGATGCCGCACCGCCGTACCGGTTTCGGTCCGGTATCCACTTTCACTGAAATCACTGTGGGACGGACGATGGCGGGCGCTTCCGGGCGCGCTGCTCTCATCGGGTGGGCGTGACCGGCCGCCGGCGGCGACCCTTCCCCAGCGGATTTCGAATGCGGGACGCATCAGCAGCCGGGGACCAGC >S medicaeTCTCAGAAGACGGATGTTCTGCTCGCTATCCGGCTCTGATCCAGATTGACGACGATCGAGATCGCCGTCATGGCGAGCGTTGCGGTGATGATGGCGCCTATTCCAAGAACAATCATTGTTCGCGTCCCGTGGCGCTTCGTCATGATGCGCCTGTGCCTGAAGATGCTACTCAACGCGTATTTCGCGCCATTCCCTGCATGCTTGATCCCCGACCGATCCAGAAACATGCAGCACCTCAAATGCTGGAGTGACCCCGCGCGTTAGGACGCACGGCGCACTATGCTTCGATACTGGACGCCGGTTAGATCCACAATCCCTGAACAATCATCATTGAAAACCTGTGGCTGCACTCGGCAAAAACGTTGTATCGTCAGCGTCCGATACCGCCACGGTTGAATTTTAGCGATACCGGTTAAGAGCCATGTGCCGTTAACCTTCAGGCAAGGAATTAACCATAAACATGGTCCAACACGGCGGAATGGGAAGCCTCGGCTTCTCCTCAAGGCATGATGCCGCACCGCCGTACCGGTCTAGGTCCGGTATCCATTTTCACTGAAATCACTGTGGACGAACGATGGCGGGCGCTTCGGAGCGCGCTGTTCTCATCGCTTGCGTGTGACCGGCCGCCGGCTGCGATCCTCTTCCCGGGACGATTTCTATCAGGCGCGCGTCAATAGCCGGGGACCAGC >Rhizobium sp. NGR234TTCGATACTGGACGACAAGTAGAACCGCAATTCTAAACTCTTGTGATTAAAAACCTGTTGTCTCCGGTAGAGTAAAACAGTGCAAGACAGCGGCGAGTAGCGCGTTGGTTGAATTTTAGCGATTCCGATTACGGGCTGGAAACCGTTAACCTTCAAGCAAGGAATTAACCATAAACATGGTCCAACACGTCGGAATAGGAAGTCTCAGCTTCTCTCAAGGCATGATGCCAAGCCGCCGTACCGGTTCCGGTCCGGTATGCAATCTCACCGAAGTTACTTGCGGGATGGACGATAGAGAACGCTCAGGCGCGCCGATTTCATCGACTGGGCGTGACCGGCC >R leguminosarum bv. trifoliiATTAACCTTCAAGCAAGGAATTAACCATAAACATTGATGTACACGTCGGAATGGGAAGATGCACTCGTTCCCACCAGGCATGACGCCGTCCCGCCGTACCGGGTTGATCCGGTATCCA>R etli CIAT 652ATTAACCTTCAGGCAAGGAATTAACCATAAACATTGGTTTACACGTCGGAATGGGAAGATGCACTCGTTCCCACCAGGCATGACGCCGTCCCGCCGTACCGGTTGATCCGGTATCCA

Sra03 >S melilotiGCGGCCATGGATAGCGCGAGGCAGGGGAAAGGTCCATTGCGCTTTTCCCGCACTACCCTATTAAGTCGAGCGGCAAAGGCATTGCCGGAGCCCTGAAGTTCGGCGCCGAACACTCACGCAAACGTTACGCATTTGTAATGCGCGATTCGGTCGGCCTATCCTTGAAATGCCACATTTCAATCCACAAATCATGTCGAGCGGCACTCATACAATGCCGTGAGTCTGGTGATTGGCCTGTCCCCCGCCCGCACCAGATGAGGACAAAGGCCTCATCCCCCTCTCCGGGCCTTTGTCCCGCTTTCAAAGAGCCGCCACGGCGCAGCCTCCGCGCCGTGGCGGTTTTTTGTTGCCTTTGCCCGACGGTCGAAAGCGTTTCGCCACGCAGTCTCAAATCCCCGTGAAGTCGGCGCAGTTCGGCTTCATTGCAGGCATTGTAACTTGTCTTCGCGCTCCTTCCCGCGTAGGCATAGGC >S medicaeGCGGCCATGGATAGCGCGAGGCAAAGGAAAGGTCCATTGCGCTTTTCCGTTTGCCGCACGACTTAACAGGATGGCGCAGGAGGCTCCGGACACTCACGCAAACGTTACGCATTTGTAATGCGCGATTCAGTCTGCCAATCCTTGAAATGCCACATTTGGCACCACAAATCATGTCGAGCGGCAGTCATAAAATGCCGTGTGTCTGGTGATTGGCCTGTCCCCCGCCCGCACCAGATAAGGACAAAGGCCTCATCCCCCTCTCCGGGCCTTTGTCCCGCTTTCAAAAAAACCGTCACGGCGCCGCCTCCGCGCCGTGACGGTTTTTTATTGCCGGTAACAGCGCGCAGGGGCGGCTACCAGCGCGATCTCAAATCCCCGTGAACTCGGCACAGATAGGCTTCATCGCAAGCATTGTAACTTGTCATCGCGCCCCTTCCCGCGTAGGCATA >Rhizobium sp. NGR234CTCACGGAAACGTTACGCATTTGTAATGTGCGAGTCGGCCGGGCAATCCTTGAAAAGCCACATTTAAATCCTCAAATCAGGGTGAGCGGCACTCAAACGATGCCGTCGTCTGGTGATTGGCCTGTCCCCCGCCCGCACCAGATGTGGACAAAGGCCTCATCCCCCTCTCCGGGCCTTTGTCCCGCTTTCACGAAGCCGCTACGGCGCCGCCTCCGCGCCGTAGCGGTTTTTGTTTGC>R leguminosarum bv. trifoliiCTCACCAAACTGTTACCGATTTGTAACGATCGCCCTCCCTTGAAAAACCACATTCTGAGCCACAAATCCATGTCACCGGCGCTTGATCGCGTCGCGGGTCTGATTACCGGCTTGTCCCCCGCCGCGTCAGGCTTGGACAAAGGCCTTATCCCCCTCTCCGGGCCTTTGTCCCCACTTTAAAGTCGCCATGGCCAACCTCCAGGCCATGGCGACTTTT  >R_etli_CIAT_652CCTTGAAAAACCACATTCGCAGTTACAAATCCATGTCACCGGCGCTTGATCGTGCCGAGGGTCTGATCACCGGCTTGTCCCCCGCCGCATCAGGCTTGGACAAAGGCCTTATCCCCCTCTCCGGGCCTTTGTCCCCATTTTAAGGTCGCCATGGCCAACCTCCAGGCCATGGCGACTTTT

Sra35>S melilotiTAGAGCGTAAGCCAATAGGAATGGGCAGGTCGATTCATCGGCCTGTTCGGCGGAGCGATCCGCATCGCGTGGGAGGTTTCCGACCTTAAGCCGGGTCGGTTCATCCGCACCACGCAACCGCAGCCGCCGATCGATCGATCGGCAAATGGCCGGGCAACCGGCTGATGAGCTCCCTTTTCGGCCTCGCCGCAAAGGAGCAGTGAAAGGCAGAGAGAA>S medicaeATGGGCAGGTCGAAACGTCGGCCTGCTCGGCGGAGCGATCCGCATCGCGTGGGAGGTTTCCGGTCTTAGCCGGGTCGGTCTATCCGCACCACGCAACCGCAGCCGCCGATCGATTGATCGGCAAGTGGCCGGGTTAACCGGCTGATGAGCTCTCTTTTCGGCATTTGCCGCGAAGGAGCAGTGAAAGGCAGAGAGAA >Rhizobium sp. NGR234AGAGCGAAGCTTACTGAATTGGGCAGGTTGACGTGTCGACCTGTTCCGGCGGAGTGATCCGCATGCGCGTGGGAGGAAGCCGGTCTTAGCCGGGCCGGTATATCCGCACCACGCAACCGCAGCCGCCGGTCATCGACCGGCAAGGAGCCGGGCAACCGGCTGAACAGTTCCCGCTTCCGGCTTGGCCGGGCGGGGCAAAGAGAGGCAGAGAGAA >R leguminosarum bv. trifoliiCGGCCTGTTTCCTGCGGACCTTGTCCGCATCCGCGTGGAAGGTGAGGGGTCTTAGCCGGACCCTAATGATCCGCACCACGCAACCGCAGCCGCCGGAGAGATCCGGCATCACGGGCCGGGCGACCGGC >Rhizobium etli CIAT 652GGCCTGTTTCCCGCGGACCTTGTCCGCATCCGCGTGGAAGGTGAGGGGTCTTAGCCGGACCCTAATGATCCGCACCACGCAACCGCAGCCGCCGGAGCGATCCGGCATCACGGACCGGGCGACCGG

Page 6: Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50 Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49

Sra45  >S melilotiGACGGAAATGGCCGACCTGATCAAGGAGCTCGTAAGCGGGGTCGTTGACAGCGCGTTGAAAGAGATCCTCAAGAAAACCAGAGCGACCGGAACCGCGGCCAAGCGGGCGAAACGGCGAAGCAGGAAAGCCAAGTCAGGCGGCATACTGGCTGACATCGTCGAGGCGGCCTTCCGTAAACCGGCAAAGAAGCAGGTGAGCCGTCGCCGGACCGCGGCTTCCCGGAGCAAACTGCGCCGCCGCTCGGCCTAGATCACGTGTTCTAAGCCTCATCCCGCCCCGAGAGTGGTGCGGAAGCCGAACTTTGAGGGACCATCAATAATTTTGCGATTGGGTGGTGAAAACCACGTCCATGCGTGCTATCTAGACCCTAATCGATATCCGGTCCTTGAAACCGGCGCAGGAAGGAAGACGAG >S medicaeAATGGCCAACCTGGTCAAGGAGCTCGTGAGCGGGGTCGTTGACAGCGCACTGAAAGAGATACTCAAGAAAACGAGAACGACCGCGACCAAGCGGACCAGACGGCGAAACAGAAAAACCGCATCCGACGGCGGCATACTGGCGGATATCGTTGAGGTGGCTTTCCGTAAGCCGGCAAAAAAGCAGGTGAGCCGTCGCCGGACCGCGGCCTCCCGGAATAAACTGCGCCGCCGCGCAAAGTCGTAATCGCGTTCAGCTTCCTCATTCCGCTGCTAGAGTGGTGCGGAAGCCGAACTTTGAGGGCCCATCAATAATTTTGTGATTGGGTGGTGAAAACCACGCGCATGCGTGCTATCTAGACCCCGATCGACATCCGGTCCTTGAAACCGGTGCAGGAAGGAAGACGAG >Rhizobium sp. NGR234ATGGCGGATCTGATCAAGGAACTCGTCAGCGGCGTAGTCGACAGCGCGCTGAAGGAAATTCTAAAAAAGGCGGGTGCGAGAACAAGCGCAACGCGACGCACGAAGCGCCGTACAAGAAAATCGTCGACGGGCGGCGGTATCCTTGCGGACATCATCGAGGCGGCGATCCGCAAGCCGGCAAAGAAACAAGTGAGCCGGCGCCGCACCGCGGCTTCGCGCAGCAAAGTGCGCCGCCGCACCGCCTGAGGTGGTTCGAAAGCCAAATTTTGAGGACCATCAATATTTAACGAGATTGGTGGTGAAAACCGCGCCCATGCATGCTATTTAAGCTGCAAAGGCGACATCCGGTCCTTGAAGCCGGC-CAGGAAGGAAGAC

Sra47  >S melilotiGAGTTGGTCTCCCTCACAGCGCTACGGTCCAATCAGACGCAAAAGTCGCCGTAGCACCTGGTTTTGCTGCCTGTTTCCGGATCGACTGCGATCCGGCGACATGCAGCCGGCGCGGACGGCGTCATGCCGGCCTTCGCCTGCCTCTTCGTTTCCCGTCCACCGCAAGAAGTTCGCCCCTTCCGCAGACGCGCATATGCACGCGCCGAGCCGCTCCGCATTCGGGAATGCGTCCCGATCGCGGATGAAGAATGCTCCGGAATCAAAGGGCTAGAGCGTCCTTGAACGAGGCGTGCAGCAAACGGCCGCGCCCGGCGCCCGTTAAAGGCTCCAAGCCCGCATGCCTGAATCGCTGCACGGTCCGCCCGTAAGCAGTACCGTGTCGACAGCCGTCAAGGCTGCACCACGCCTTCGTCACAAAGCACGAAGGACTCTCTAGCGCTTTGAGGCTGCATGGCCGGCCCCCGAAAATCGAATATGGATTTTCAGCCCGGTGTTGCAGCCGGCCCGCGAATTGCAATGGCCGTGCCCCCAACCTGATGGCGGTCGCTTTGCGAGAGTTCGAAATTCCCCTGCCAGCCGGTGGTTAGCAGGCGAAAACTTGCCGGTTAGGTGAAGCGAAATTGTGGCAAGGACCGCTTCTCTTGCGCAAATGGCGCAAATTTCTTCGCCGATTCGCTACTGTGACCCAGGAATGGCGCGTTTTTGCCGGTCGCTGGGCGGCTGTTTGACGATTATCCTGCGCCCCGCCGGCCTTGCCAATGGAGGGCTGGCATCGCTGCTTTCAGGG>S medicaeAAGTCGCCGTAGCATTGGATTTGCCGCATGGATCCGCTAAGTTCCGATGCCATGCAGCCGGCGTGACCGGCCTGATGCCGGGCCTTGCCTGCGTCTCTTCCCGTCCATCGCAAGAGATCGTCCTTCCATAGACGTGCATTCGCGCACACCGAGCCATTCCGCATTCGGAGATACTCCCGACTGCAGATGAAATACTCCGGAACCAAAGGGCTAGAATGTCCTTGACCGAGGCGTACAGCGAATAGCGCGCCCGCTCGTTGGAACGCCCTGTCGGACGCCGGTACGGGACAAGCTGATACGCTGCGCGGTCCCGCCCGAAAGCGGCACCGTCCCGGCAACCATCAAGGCTGCACTCCGCCTTCGTCTCAAAATCCGAAGGACTTTCTAGCGCTTTGAGGCTGCACGCTCCGTAGCCGAAATCGAAATGGATCCTCGGCGCACAGTGATGCAGCCGGCCAATTGCAATGACCGTGCCCCAACCTGATGGCGATCGCTTTGCGAGAGTTGGAATTCCCCTGCCAGCCGGTGGTTAGCGGGCGGAAATCTGCCGGTGAGGTGAAGCGAAATTGTGGCAAGGTCCGCTTCTATTGCACAAAAGCCGCCGTTTCTTCGCTAATTCGCTATTTAGGCCCAAGAAAGGAGCGTTTCTACCGGTC>Rhizobium sp. NGR234GCGCGGGCCGGCCTCATGCCGGGTTGCGCCGCTCTGCGTTTCCGTCCATCGCACCGGGTATGCCCCCCGTAGGCGCGCAAATTCCTTGCACGCAAAGAGCCGCCCGCGTTCGGGAGAGCGTCCCGAACGCGCGAATGAAATGCTCCGGAATCAAAGGGCTAGAGCGTCCTTGATCGAGGCGCGCGACAAACCTCAGGCGAACCTGAGAGGCCGAAGCTTTGCATGGCTCCGCCCGAGAGCGGTGCAGCCCTATGGCAACCACGCAAACTACATCACGCCTTCGCTACGACGTACGAAAGACTCTCTAGCGCTTTGAGGCTGCACATCTCCTATCGCTGGATCCCGATGTCGAGTTCCAGGATTGAAGTTGCAGCCGGCCCGCAAACTGCAATGGCCGTGCCCCAACCTGATGGCGGTCGCTCAGCGAGATATGGAATTCCCCTGCCAGCCGTTGGTCAGCGTCAGGACTTTGCCGGTGAGGTGCAGCGAAATTGTGGCAGAGATCGCGCCTAACGTGCGCGAGGCGCGCATTTCTACGCCGATCCGGCTGGATCGACCCAAAATTGGCGCG

Sra51  >S_melilotiACAGCGGCTTCTGCTAGCCGTTCCGTGCAATTTCTCCGCGCGCTTGGCGCCCGGGTTAATACTACTAATACTCTCCGAAACCCCTCAATTTTGCTTGGAACGGCGAATTTCGCTTGAGCCGGCAATATATCCTGCAGTTTTTCTGTAGGCATGAAGGCGATGGTCCCTCGGACCAGTGCGCTGCGTGAACGACAAGCGATATCAGGCGCTTGGACCGGGAAACCAGGCTGCACAAAGTTGCGGCATACCCATGAGCGACGGAATTTGGCGCAAATGATCCTGCCGCGCCCCAATCTTTGGTCGAAAAGCTTTGAATTCAACAGCTTGCAATGCTTTTTGAATACGCGAGTCAAAACGACCAACTGACCTCTTTTTGAGCAATGAGAAGACGCAATACCTCGTCAGAAAAGTTTTGCTTGCCAATTCAAAATAAACCCATCACTCTTACTGTGTTCGGGCAATCTGCGAACACGGGAAGATCTTGAATAAAAGCGGGCCGGAGACGCAACCCACTCCGGGCGGCCAACGGGGGGAGGCTGTTATTCCTTCCTGCGGCTGGTCGCGATAACCAGGACCCTTTCCTCAATTGTCGAGAACTGCCCCCACGCCCATATCGGGCAAAACTGCAATGCTGCCCGCAACGCGGGTGGAGAGAAAAGGACCTGACGC>S_medicaeACAGCGGCTTGCGCCTGCCGCGCCGTGCAATTTCTCCGCGCCCCGAATAAGGGTTAATACTACTAATACTCTCCAAACCCCTCAATTTTGCTTGGAACAGCGAAAAGCCTTCGGGCGGCAAGATATCCTTTAGTTTTTCTGTAGACATGCGCGCTGTGCTCGCACTCGCCGCCATGCTGCGAGAACCAGCAGCGATATCAGGCGCTTGGAGGGAGAAACCCGGCTGCACAAAGTTGCGGCAAGCCCATGAGCGACGGAATTTGGCGCAAATGGTCCACCCTGCCCCGAGCGTCTACCCAAAAAGCTTTGAATTCAACAGCTTGCGATGCTTTTTGAATAATGGAATCTAATCGCCGAACTGACCTCTTTTTGAGCAATGAAAAGACGCAATACCTCGTCAGAAAAGTTTTGCTTGCCAATTCAAAATAAACCCATCACTCTTACTGTGTTCGGGCAATCTGCGAACACGGGAAGATCTTGAAATAAAAGCGGGCCGGAGACGCAACCCACTCCGGGCGGCCAACGGGGGAGGCTGTTTTTCCTTCCTGCGGCTGGTCGCGATAACCAGGACCCTTTCCTCAATTGTCGAGAACTGCCCCCACGCCCAAACTGGGCAAAACTGCAATGCTGCCCGCAAATCGGGTGAGTGAAAAGGACCTGACGC>Rhizobium_sp._NGR234AATTGACCTGTTTTTGAGCAATGAGAAGACTCAATACCTCGCCGGAAAAGTTTTGCTTGCCAATTCAAAATAAACTGATCACTCTTACTCTGTTCGGGCAATTTGCGAACGCGGGAAGATCTTGAAATAAATGCGAGCCGGAGACGCAAACCACTCCGGGCGGAGAATCGTGGGAGGGCCAATTTGCCATCCTTCTCAAGGTTCGCTGCGATAACAGGACCCTTTCCTCAATTGTCGAGAACTGCCTGCCCCACGCCCTTCCGGGCAAACTGTAATGCCACCCTTCGACCGGGTGGAGAGAAAAGGACCTGACGC

Page 7: Sinorhizobium ----MT-----ALDIQISV-EAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAE 50 Brucella ----MHNVSDNAIHIDIMI-EAGNWPDEASLESLVSKSVAAAWNNLG------LKSATSE 49

>R_leguminosarum_bv._trifoliiCGTTAAAAAACTTTTGCTTGCCAAAGTCCTTTAAACGCAGCACTCTCAGCGTGTTCGGGCATTTTGCGAGCATGGGAAGTCCTTAAGTATTTGCGCGCCGGGAACGCTAATATCCCGGTCAGCCGGTTCCGAAAATGGCGGGCGAAAGTCCTGCCTGGAACAGGTCGAGGTAGAGGGGACCTTTTTCTCAAATTTCAAGAATTGCCTGCCAACACCTCCCGCAAGGAGGGCAATGCTATGATGCTGCCCGTGTGGATGGCGGGCAGAGAGAAAAGGACCTGAGGC>R_etli_CIAT_652CGTTAAAAAACTTTTGCTTGCCAAAATCCCGGAAACGCCGCACTCTCGCCTCGTTCGGGCATTTTGCGAGCATGGGAAGTCCTTAAGTATTTGCGCGCCGGAAACGCTAATATTCCGGTCAGCCGGTTCCAAAAAAGGCAGGCGAAAGTCCTGTCTGGGGCAGGCCGAGGTAGAGGGGACCTTTTTCTCACATTTCAAGAATTGCCTGCCAACACCTCCCGCAAGGAGGCAATGCTATGATGCTGCCCGTGTGGATGGCGGGCAGAGAGAAAAGGACCTGACGC

Figure S5