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1
Analytical Methods of Life Functional Substances
2
30
AAL-AGC502J
/Instructor
/Class subject Bioorganic cheistry on 1 determination of relative/absolute streochemistry of natural products and 2 investigation on mode of action of natural products
/Object and summary of class Object: This course offers an opportunity to learn importane of isolation, structure determination and total synthesis in research studies of natural product chemistry and to help students develop knowledge on chemical biology where mode of action of natural products are investigated with designed and synthesized chemical probes.Summary of Class: First, researhers who study different fields of natural product chemistry introduce methods for determining stereochemisty of natural products and purification of optically pure compounds. Students will then learn how to synthesize chemical probes and how to evaluate mode of action of natural products.
/Keywords Stereochemistry, total synthesis, structure determination, biological activity, chemical biology
/Goal of study Students will understand basics on stereochemistry of organic compounds and learn various techniques to determine streochemistry of organic compounds.
/Contents and progress schedule of the class 1. Relative/absolute stereochemistry of organic compounds and optical purity Masaru Enomoto2. Methods for determination of relative/absolute streochemistry of organic compounds and for optical purity3. Synthesis of optically pure organic compounds using asymmetric metal catalysts Masaru Enomoto4. Synthesis of optically pure organic compounds using asymmetric organic molecular catalysts Masaru Enomoto5. Synthesis of optically pure organic compounds using enzymes purified from yeasts Masaru Enomoto6. Retrosynthesis of natural products Shigefumi Kuwahara7. Reseearch studies of natural products Shigefumi Kuwahara8. Measurements of biological activities of natural products Keiichi Konoki9. Heterologous expression of recombinant proteins and measurement of their biological activities Keiichi Konoki10. Photoaffinity labeling of binding proteins for natural products Keiichi Konoki11. Affinity chromatography for identifying binding proteins for natural products Keiichi Konoki12. Natural products exhibiting their biological activities against voltage-gated ion channels Mari Yotsu-Yamashita
2
Analytical Methods of Life Functional Substances
2
30
AAL-AGC502J
13. Screening of drug candidates using chemical library Keiichi Konoki14. NMR Application of NMR to the study of natural products Mari Yotsu-Yamashita15. Structure determination of natural products Mari Yotsu-Yamashita16. E nd of term exam
/Record and evaluation method Impact Factor 5 Full Paper 5 Evaluation if performed comprehensively based on submitted reports and end-of-term exam. Students are required to submit a report in which they read a recent full paper with impact factor more than 5.0 and summarize and print out using more than 5 pages of A4-size papers. The theme of the paper should be either "determination of optical purifity or relative/absolute streochemistry of organic compunds" or "chemical biology"
/Preparation Students are recommended to review what they learned about organic chemistry by reading the folloiwng references.
/Textbook and references 1. Reference I/II/III , 2. Reference / Organic Chemistry Jonathan Clayden,
Nick Greeves, and Stuart Warren3. Reference / Organic Chemistry Thomas N. Sorrell4. Reference 8 Silverstein, Webster, Kienmle,
Bryce
/self study Students are recommended to read recent publications on isolation, purification, total synthesis or mode of action of natural products. In addition, studens are recommended to review textbooks or references to develp their knowledge on organic chemistry.
/Notes : : konokim.tohoku.ac.jp : masaru.enomoto.a2tohoku.ac.jp : shigefumi.kuwahara.e1tohoku.ac.jp : mari.yamashita.c1tohoku.ac.jp @
Questions will be taken directly after each class or anytime through e-mail.Keiichi Konoki: konokim.tohoku.ac.jpMasaru Enomoto: masaru.enomoto.a2tohoku.ac.jpShigefumi Kuwahara: shigefumi.kuwahara.e1tohoku.ac.jp Mari Yotsu-Yamashita: mari.yamashita.c1tohoku.ac.jpPlease change to @ when you e-mail.
3
Development Research of Frontier Industries
2
AAL-AGE503J
/Instructor
/Class subject Present status and problems in advanced industrial development
/Object and summary of class 21
/Keywords 6 advanced industry, technology development, R & D, sixth sector industrialization, functional food, invention reward, patent, intellectual property, excellent companies, result-orientation, management strategy, marketing
/Goal of study
/Contents and progress schedule of the class 1. Advanced research in the food company Kitazawa2. Functional food development in the food company Kitazawa3. Human resource development for research and development in the food company Kitazawa4. Report preparation5. How to get a patent in the field of biotechnology and the representative examples Ochiai6. Engineering ethics Ochiai7. Protection and control of intellectual properties Ochiai8. Report preparation9. Application of hot-compressive water for food processing Fujii10. 1 High pressure food processing : part1 Fujii11. 2 High pressure food processing : part2Fujii12. Report preparation
4
Development Research of Frontier Industries
2
AAL-AGE503J
13. 6 ? What is the sixth sector industrialization including the collaboration between agriculture, commerce and industry Itoh14. 6 Advanced case study of the sixth sector industrialization : part1 Itoh15. 6 Advanced case study of he sixth sector industrialization : part2 Itoh16. Report preparation
/Record and evaluation method Performance and reports which should be handed to eachprofesssor 4 reports in total.
/Preparation Learn the contents in advance.
/Textbook and references Handouts will be distributed12345 :
/self study
/Notes 18:00-19:00E-mail [email protected] [email protected] [email protected] [email protected]
5
General Assessment Science of Agricultural Products and their Processed Food
2
AAL-OAG505J
/Instructor
/Class subject Theory and practice on quality and safety evaluation of agricultural products and food
/Object and summary of class The accidents related to food safety often occur in Japan, which is a big problem. The establishment and practice of unified safety control rules are required in the world. This course covers the knowledge from the foundation to practice on quality and safety of food, agricultural products and processed goods in Japan. In addition, we will explain the current state and correspondence of quality and safety management of food, agricultural products and processed goods in other countries in this course.
/Keywords CODEXHACCPAgricultural, livestock, and fishery products, Food resources, Processed food, Quality evaluation, Food safety, CODEX, HACCP, Regulation, World food/agricultural circumstances
/Goal of study This course is designed to help students understand the wide range of latest information including scientific information from the foundation to practice of the quality of food resources such as agricultural, livestock, fishery products and processed foods in addition of legal regulations, current state of other countries.The purpose of this course is also to help students judge the quality evaluation and safety of food scientifically.
/Contents and progress schedule of the class 1 Introduction2 Design of food safety3 Technology for food safety4 Safety assessment and recent topics on genetically modified crops5 Safety assessment and recent topics on genome-edited crops6 Safety of livestock products7 Quality of milk, meat, eggs and their products, and its prospective development8 Hazard in marine products and analytical technique for harmful factors
6
General Assessment Science of Agricultural Products and their Processed Food
2
AAL-OAG505J
9 Challenge for safty production of marine products10 Food Safety Policy11 Food Labeling System and Consumers' Behavior12 Harmful microorganisms in foods, and inspection methods for food pathogens13 HACCP Food safety management systems; HACCP and related schemes14 Presentation and discussion15 Presentation and discussion
/Record and evaluation method 2050 30%
/Preparation
/Textbook and references
/self study
/Notes 1
2E-mail address:[email protected]
7
Food & Agricultural
Immunology Joint Lecture
2
AAL-OAG507E
/Instructor ISLAMJAHIDUL
/Class subject Basic and Applied studies on Food & Agricultural Immunology
/Object and summary of class This class aims to study the basic concepts of food and agricultural immunology and their application for drug-independent cultivation and food production. Each unit professor of the center and collaborative professor in Tohoku University will give the lectures weekly to introduce their specific research relating to immunology field.
/Keywords Plants, Livestocks, Fish, Mollusks, Crustaceans, Innate immunity, Disease resistance, Pattern-recognition receptors, Allelochemical, Probiotics, Immunobiotics, Metagenome, Mucosal vaccine, Health impact assessment, Transcriptome, Metabolome, Bioinformatics, Epigenetics, Implementation, Risk communication
/Goal of study To understand the new study field of food and agricultural immunology and how to apply the concept for drug-independent cultivation and food production.
/Contents and progress schedule of the class 1. Overview of food & agricultural immunology.2. Introduction of immunology.3. Overview of immunobiotic application based on livestock immunology.4. Overview of vaccine development based on mucosal immunity.5. Immune regulation in the oral mucosa.6. Recognition and exclusion of pathogens in innate immunity.7. Overview of innate immune system of mollusks and crustaceans.8. Overview of immune system of fish and disease prevention study.9. Overview of plant immune system.10. Advancement of pest management system based on plant immunity.11. Overview of functional food evaluation.12. Overview of effects on human health relating to epigenetics.13. Overview of plant response to environmental cues.14. Ecology of viruses in natural environment.15. Overview of cooperation with society.
/Record and evaluation method Participation30%, Reports70%
/Preparation Participate in the International Food & Agricultural Immunology Lecture is highly recommended.
/Textbook and references Textbook and references will be introduced by each professor.Video materials are also available.
/self study It is important for students to acquire preliminary knowledge to prepare for class by reading relevant information and ocuments that are commonly available.
/Notes Orientation of this lecture will be performed at first class. And then, each lecture will be provided by ISTU. Instructors:Faculties in CFAI, Graduate School of Agricultural Science, Tohoku University, and Faculties in Tohoku University School of Medicine, Tohoku University Graduate School of Dentistry and Graduate School of Pharmaceutical Sciences, Tohoku University, and Faculties in foreign institutions.
8
Biodiversity in Grassland and Forest
2
AAL-OAG508J
/Instructor
/Class subject Learn about environmental conservation and biodiversity in complex ecosystem
/Object and summary of class Explain and give lectures based on the latest knowledge on environmental preservation and maintenance of biodiversity in complex ecosystems such as forests, grasslands and rivers. We will deepen our understanding of these fields.
/Keywords Biodiversity, genetic analysis, riparian forest
/Goal of study We recognize biodiversity of animals and plants and microorganisms broadly and understand diversity analysis method.
/Contents and progress schedule of the class 1 5 1st - 5th: Function of ecosystem connecting forest and ocean 6 10 6th - 10th: Concepts of biodiversity and genetic diversity in the environment of forest,
agriculture, livestock, etc. and their conservation 11 15 Eleventh - 15th: Environmental diversity and human, animal, parasite involvement
/Record and evaluation method Attendance status and report. The report is a summary of lecture content plus detailed comment on the subject handled in the lecture.
/Preparation Biology and molecular biology at undergraduate.
/Textbook and references Environmental science: a global concern 5th ed. Cunningham and Saigo, WCB/McGraw-Hill, Boston 1999
/self study Office hour: Especially not set up, but always accept questions etc. by mail etc.
/Notes Office hour: Especially not set up, but always accept questions etc. by mail etc.
9
Bioresources Chemistry 2
AAL-OAG509E
/Instructor
/Class subject Background and present status, actual problems and future prospects of utilization of bioresources
/Object and summary of class : To understand the profiles of the substances produced by respective organisms as well as the present status and problems for effective utilization : Lectures on the biomass from terrestrial and marine animals and plants, microorganisms proteins, carbohydrates, lipids, peptides, amino acids, etc. and utilization cases as food or feed
/Keywords Bioresource, biodiversity, biomass, maintenance, energy source, biocatalyst, bioreactor, industirial bioproduts, fish and shellfish, quality control, food hygiene, dairy food, eggs
/Goal of study To understand the profiles of the substances produced by respective organisms as well as the present status and problems for effective utilization
/Contents and progress schedule of the class 1 General introduction, the characteristics of marine bioresource based on the chemical compositions 2 Quality control strategies of seafood based on the ecology and biochemical features of marine organisms 3 Important points of seafood processing from hygienic viewpoints 4 Present status and future prospects of effective utilization of marine organisms 5 Overall review and report writing 6 Designing of food frocessing based on water activity 7 Effective utilization of underutilized resources using pressurized hot water 8 Science of high-pressure aided processed foods 9 Advanced use of rice powder and flour 10 Overall review and report writing
10
Bioresources Chemistry 2
AAL-OAG509E
11 History and prospect of milk utilization 12 Current and future prospect of meat and egg utilization 13 Development and prospect of functional animal foods 14 Extensive utilization of novel functional materials in dairy food field 15 Overall review and report writing
/Record and evaluation method 3 3 Reports should be submitted to each professor. Scores are evaluated based on the attendance and the marks of submitted reports.
/Preparation Keep concerns about the effective utilization of bioresource and biomass
/Textbook and references No special texxtbookFAO HPhttp://www.fao.org/fishery/quality_safety/en
/self study 3 Reports should be submitted to each professor by the deadline set by each peofessor.
/Notes This subject is regarded as the one for Humane Security Course. Please ask each professor for details.
[email protected]. [email protected]
Prof. [email protected] , Prof. Kitazawa
11
Biosphere Ethics 2
AAL-OAG512J
/Instructor
/Class subject Through ethical thinking about various problems in the biosphere, students will cultivate ethics of science and engineers engaged in life.
/Object and summary of class Considering human being, biological group, the ecosystem, environment surrounding it, agriculture and agricultural science cooperate with the life zone and have a history coexisting. From now on we need to have sound thinking and ethics of agricultural researchers and students as a member of the life sphere in order for us to coexist sustainably in the life sphere. It is the foundation of agricultural sciences. With the rapid development of life sciences in recent years and the seriousness of resource, environment and food problems, think about Biosphere ethics as the foundation of agricultural sciences that is responsible for the protection and restoration of the environment, the contribution to human development and the preservation and use of various organisms.
/Keywords social responsibility, environmental ethics, life ethics, biotechnology
/Goal of study Through consideration on the ethics of the biosphere, students acquire the development / research consciousness and attitudes of science and engineers who contribute to environmental conservation and human development.
/Contents and progress schedule of the class 1. A scope of biosphere ethics, fluctuation of human mind on social difficult problems 2. Scientism and the limitations on formal mindset approach 3. Social responsibilities of the scientists 4. Outlook on ethics in the animal food production 5. Ethics for human-animal relationships 6. Ethics for conservation of marine bioresources and its utilization 7. The present situation of genetically-modifiedGMcrops: for understanding of their risk and benefit
12
Biosphere Ethics 2
AAL-OAG512J
8. Diversity of nature view and its change 9. What is ethics?Outline of the object and method 10. I Genealogy of biosphere ethics IFollowing the formation and development of biosphere ethics 11. II Genealogy of biosphere ethics II Following the formation and development of biosphere ethics 12. Challenges of biosphere ethicsExploring its future directions based on "symbiosis" and "circulation"
/Record and evaluation method 80%Requests that at least 80% of attendees in all lectures submit reports and determines the grade. The report is graded by the teacher in charge for each given theme, and the average point and the normal point such as the attitude of the class are combined and evaluated
/Preparation Nothing
/Textbook and references 2005 3-4 Biological Science TOKYOvol.56 342005
/self study Nothing
/Notes Contact: KITANI Shinobu -Environmental Economics Lab.Consult with corresponding professors for each class content
13
Advanced Lecture on Ecology 2
AAL-BAB506J
/Instructor
/Class subject In this course, students will understand ecology and applied biology which are provided by professors from Graduate School of Agricultural Science and other schools in Tohoku University.
/Object and summary of class 4 11 10 It is desirable for students to attend various lectures over 10 lectures and gain the perspective needed to review the comprehensive ecology field.
/Keywords
/Goal of study The purpose of this course is to help students better understand current subjects about global warming, climate change, species diversity, and pollution.
/Contents and progress schedule of the class 4 11 , 4 Conservation of species diversityGlobal warming and climate changePollution and its countermeasuresBiological production in ecosystem4
/Record and evaluation method 10 Attendance with short tests over 10 lectures and submitted reports for one lecture are evaluated.
/Preparation
/Textbook and references
/self study
/Notes A4 2-3 12 : pdf [email protected] 10 7 Report pdf file should be submitted to Satoshi Katayama E-mail: [email protected] by end of December.
14
Integrated Lectures for Biochemistry and Molecular Biology
6
AAL-BIO526J
/Instructor
/Class subject 24 1 1
/Object and summary of class 2017 ; ; , ; ; , , ; ; 16 / 16 24 18 6
/Keywords
/Goal of study
/Contents and progress schedule of the class 1 2 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 RNA 18
15
Integrated Lectures for Biochemistry and Molecular Biology
6
AAL-BIO526J
19 20 21 22 23 24
/Record and evaluation method 18 3
/Preparation
/Textbook and references
/self study
/Notes 1 2018 3
2 3 E-mail address:[email protected]
16
Joint Lecture on Plant Science 2
AAL-PLA514J
/Instructor
/Class subject Plant Science for Agricultural Production
/Object and summary of class In this course, students will learn about plant science for agricultural production.
/Keywords Crop Science, Horticultural Science, Plant Pathology, Soil Science, Environmental Crop Science, Forest Ecology, Molecular Ecology, Chemical Ecology, Entomology
/Goal of study The aim of this course is that students establish their own idea about plant science for agricultural production.
/Contents and progress schedule of the class 1. Entomology Prof. Konno2. Crop Protection Prof. Honma3. Horticultural Science Prof. Kanayama4. Horticultural Science Assoc. Prof. Kato5. Plant Pathology Assoc. Prof. Ando6. Soil Science - As, Cd Contamination and Countenmeasures Prof. Makino7. Forest Ecology Prof. Seiwa8. Forest Molecular Ecology Assoc. Prof. Suyama9. Soil Science Assoc. Prof. Kanno10. Insect Chemical Ecology Assoc. Prof. Hori
/Record and evaluation method 100 Reports, short tests, or attendance
17
Joint Lecture on Plant Science 2
AAL-PLA514J
/Preparation Students are required to prepare for class according to the goal and contents of each class.
/Textbook and references No textbooks will be used.
/self study The session time is limited and thereforeself-directed learning is important. Students arerequired to prepare and review for each class.
/Notes 1 Organizer Prof. Konno E-mail: [email protected]
18
Plant Cell Biology 2
AAL-PLA514J
/Instructor
/Class subject Plant Cell Biology
/Object and summary of class In this course, researchers who study different fields of plant science from various perspectives introduce the current topics and state of their specialized fields, so that students can deepen their understanding about plant development, plant reproduction and genetics, plant nutrition and function, photosynthesis, and stress tolerance.
/Keywords Plant development, Plant-pathogens interactions, Plant immune systems, Nitrogen metabolisms and productivity, Photosynthesis, Proteolytic systems, Plant reproductive systems, Plant mitochondria, Nutrient transport systems
/Goal of study This course is designed to help students to gain the current advances of knowledge and technologies in the Plant Cell Biology, and be able to apply them to conduct research in their major.
/Contents and progress schedule of the class 1. Genetic regulation of plant development: Formation of shoot apical meristem Yukihiro ITO2. Genetic regulation of plant development: Maintenance of shoot apical meristem Yukihiro ITO3. - Proteolytic system of plants: Ubiquitin proteasome system and autophagy Hiroyuki ISHIDA4. Proteolytic system of plants: Intraorganellar proteases Hiroyuki ISHIDA5. Structures and functions of plant organelle: Pollen development and mitochondria Tomohiko KAZAMA6. Structures and functions of plant organelle: Plant organelle genomes and maternal inheritance
Tomohiko KAZAMA7. Sexual plant reproduction: Sexual reproduction mechanisms in Brassicaceae Hiroyasu KITASHIBA8. Sexual plant reproduction: Self-incompatibility in Brassicaceae Hiroyasu KITASHIBA9. Molecular plant nutrition: Nitrogen transport systems Soichi KOJIMA10. Molecular plant nutrition: Nutrient transport into root cells Soichi KOJIMA
19
Plant Cell Biology 2
AAL-PLA514J
11. RNA Virus infection and plant immune system: RNA silencing in host plant and viral RNA silencing
suppressors Hideki TAKAHASHI12. R Virus infection and plant immune system: Dynamisms in plant defence systems against virus infection
through R proteins Hideki TAKAHASHI13. Molecular bases of nitrogen utilization in plants: Nitrogen Assimilation and Recycling Toshihiko HAYAKAWA14. Molecular bases of nitrogen utilization in plants: Nitrogen Sensing and Signaling Toshihiko HAYAKAWA15. Productivity and photosynthesis in rice: Yield and biomass production Amane MAKINO16. Productivity and photosynthesis in rice: Photosynthetic improvements Amane MAKINO17. The primary metabolism in rice: Interaction between carbon and nitrogen metabolisms Mitsue MIYAO18. The primary metabolism in rice: Strategies for improving rice productivity by genetic engineering Mitsue MIYAO
/Record and evaluation method 8 100 Attendance more than 80% of all classes is required to be eligible for the evaluation. Submitted reports and/or points from the short tests are evaluated. The evaluation methods are different among academics, and will be designated in each class.
/Preparation
/Textbook and references / 6 The textbook Plant Physiology and Development, Sixth edition by Lincoln Taiz, Eduardo Zeiger, Ian M. Mller, and Angus Murphy, published by Sinauer Associates is recommended as a reference book.
/self study
/Notes 9 3 4 This class is an omnibus lecture series.
20
Joint Lecture on Applied
Aquatic Bio-Science2
AAL-APS515J
/Instructor
/Class subject In this course, students will understand current researches and subjects which are provided by professors from Applied Marine Biology course, Graduate School of Agricultural Science.
/Object and summary of class This course is designed to help students understand the current researches of Aquacultural Biology, Fisheries Biology and Ecology, Marine Plant Ecology, Marine Biochemistry, Biological Oceanography, with the hope that applied marine biology will play an important role in food production from the sea and conservation of ocean environment.
/Keywords Invertebrate, fish, species diversity, biotic community, nekton, benthos, plankton
/Goal of study
/Contents and progress schedule of the class 1 Endocrine control of sex differentiation and gametogenesis in bivalve molluscs 2 Current topics in innate immune systems of aquatic invertebrates 3 Guidance for report 4 Biodiversity in coastal marine area 5 Estuarine ecology 6 Guidance for report 7 Phase shift between kelp forest and barren Its mechanism and restoration technology 8 Ecology of the drifting seaweed communities in the coastal ecosystem 9 Guidance for report 10 Instability of fish and shellfish proteins: Its physiological significance and importance in effective utilization 11 An attempt to maintain the quality of fish 12 Guidance for report
21
Joint Lecture on Applied
Aquatic Bio-Science2
AAL-APS515J
13 Research expedition of Arctic and Antarctic Oceans 14 Deep sea research expedition 15 Fish Wars Concerns the changing balance in the competition for seafood among Man, Fin-fish and Squid
/Record and evaluation method Attendance over 60% and submitted reports for two lectures are evaluated.
/Preparation
/Textbook and references 3 1998Janeway: 7 , 2010 2009 Fate - - 2015 5 2015N.F. Haard, B.K. Simpson: Seafood Enzymes, Marcel Dekker 2000 2010Lalli & Parsons: Biological Oceanography An Introduction, 2nd edition, Elsevier 1997 169 2011
/self study Students are required to prepare for class according to the goal and contents of each class, and deepen knowledges on their own research subjects
/Notes
22
Functional Mycology 2
AAL-OAG511J
/Instructor
/Class subject 21 Understanding of the evolution of life science technologies in 21st century, which are supported by biological phenomena through the studies based on the microorganisms.
/Object and summary of class This course provides explanations of the basics of biological phenomena such as solute transport, gene expression, gene's transmission, stress response to understand the interaction between microorganisms and their host organisms. Moreover, the latest findings for the industrial application will be introduced. This course aims to improve the student's ability to apply the basic findings to the biological industries.
/Keywords Ti Metabolism and mass transfer of microbes, Bioenergetics, Agrobacterium, Ti plasmid, Antibiotics, Multidrug resistance, filamentous fungi, gene expression system, protein production, Yeast, Vesicular trafficking and diseases, Nutrient stress, Ruminal bacteria, Toxin proteins
/Goal of study 21 Recent progress of life science is remarkable, and almost all of findings and techniques of life science are basically supported by development of the studies on microorganisms. Students understand the microbiology based basics studies and their application supporting further evolution of life science.
/Contents and progress schedule of the class 1. 1 Solute transport in microorganisms 1 : Bioenergetics in transport processAbe2. 2 Solute transport in microorganisms 2: Biochemistry and physiology of microbial transport process Abe3. Ti Tumor-inducing Agrobacterium-mediated gene transfer 1: Structure and function of Ti plasmid Toriyama4. Agrobacterium-mediated gene transfer 2: Production of genetically modified crops Toriyama5. - Antibiotics: multi-antibiotic resistance and the public health Yoneyama6. - Antibiotics: challenges toward prevention of the antibiotic resistance Yoneyama7. 1 Recent advances in molecular studies on the regulatory mechanisms for gene expression in filamentous fungi, Part 1 Gomi8. 2 Recent advances in molecular studies on the regulatory mechanisms for gene expression in filamentous fungi, Part 2 Gomi9. Current status and issues of the protein production by filamentous fungi Gomi10. Genes and Proteins that control yeast secretory pathway Futai11. Yeast as a model for human disease Futai
23
Functional Mycology 2
AAL-OAG511J
12. Genome analysis and novel cell surface structure of ruminal bacteria Kaneko13. : Bacterial nanopore toxins: Structure-function relationships and horizontal gene transfer Kaneko14. 1 Nutrient stress responses and cellular remodeling of yeast, Part 1 Shintani15. 2 Nutrient stress responses and cellular remodeling of yeast, Part 2 Shintani
/Record and evaluation method 50% 50% 3 1,000 Students are evaluated on their points from attendance and learning attitude 50% and submitted reports 50%. Students will select three themes for the reports, and the implication for the basic biology or their ability to applications will be discussed in each report.
/Preparation References and reprints are handed out at every class.Students are expected to increase their interest for the application to microbial industries through the collection of additional knowledge related to interested lectures.
/Textbook and references 1 Gelvin 2012 Traversing the cell: Agrobacterium T-DNAs journey to the host genome. Frontiers in Plant
Science 3: 522 Madigan et al. 2014 Brock Biology of Microorganisms, Global Edition 14th /English, Pearson 3Slonczewski & Foster 2014 Microbiology: An Evolving Science, 3rd Ed., W. W. Norton & Company
/self study Students are required to review using references, and to prepare the reports on the selected lectures.
/Notes 16:00 18:00Office hours are from 16:00 to18:00 after each lecture Please ask each lecturer 30 E-mail: Keietsu Abe [email protected] [email protected] Hiroshi Yoneyama [email protected] Katsuya Gomi [email protected] Eugene Futai [email protected] Jun Kaneko [email protected] Takahiro Shintani [email protected]
24
Joint lecture on Disaster Recovery and Reconstruction I
1
30
AAL-OAG520J
/Instructor
/Class subject
/Object and summary of class
/Keywords NPO
/Goal of study
/Contents and progress schedule of the class 1. : 2. 3. 4. 5. 6. 7. 8. : NPO
/Record and evaluation method 2
/Preparation
/Textbook and references
/self study
/Notes E-mail: [email protected]
25
Joint lecture on Disaster Recovery and Reconstruction II
1
30
AAL-OAG520J
/Instructor
/Class subject Joint lecture -disaster and reconstruction in agriculture, forestry, fishery and rural life - 2This course explains reconstructing processes and problems in the ecosystem and our living area from the Great East Japan Earthquake disaster
/Object and summary of class This joint lecture - disaster and reconstruction -2 focuses on several subjects of the natural sciences, whereas the joint lecture - disaster and reconstruction -1 explains those of the social sciences. Students will understand succession and recovering processes of ecosystems from huge disturbances and of functions to produce our food. On these understanding, students establish their own idea about roles of sciences and our activities for the reconstructions. Beside that, this course helps students to examine the managing strategy to control the chemicals and radio actives distributed in ecosystems and living areas.
/Keywords Large scale disturbance, ecosystem, biological production, forest, grass field, river, sea, microalgae, production base, succession, Environmental remediation, toxic chemicals
/Goal of study The purpose of this course is to help students see the status and problems in the restructuring processes, and to establish their own idea about how to rebuilt the affected areas from biological and agricultural points of view.
/Contents and progress schedule of the class 1. Introduction -disaster and our missions for reconstruction-2. Large-scale forest fires around the world3. Changes in rocky subtidal ecosystem after the 2011 Great East Japan Tsunami and its restoration4. - Impact of disasters in forage and livestock production5. Properties of useful microalgae and attempts to create a new industry in affected area
26
6. Recovery process of fish resources in the brackish water areas and the relation between biotic
community and aquatic environment7. Current situation and future prediction of chemical pollution after the earthquake8. Current situation and future prediction of chemical pollution after the earthquake
/Record and evaluation method 2 Submitted reports for two sessions and attendance more than six sessions are evaluated.
/Preparation Self-directed learning is important for making your reports. Students should have concern over topics on restructuring processes in the affected areas shown in various media.
/Textbook and references
/self study
/Notes This class is held biennially with Introduction -disaster and our missions for reconstruction- 2E-mail: [email protected]
Joint lecture on Disaster Recovery and Reconstruction II
1
30
AAL-OAG520J
27
Scientific English in Action 2
AAL-ENG521E
/Instructor Ian Gleadall
/Class subject A review of English as a tool in science and key ways to self-improve English skills
/Object and summary of class Gain confidence and enjoyment in using English, whether for formal research communication or as an enjoyable way to communicate informally at the international level.
/Keywords Use, fun, negotiating, reading, speaking, listening, writing, presenting
/Goal of study Use "Falling Walls Lab. Sendai" as an objective for improving English skills, leading to a presentation in Sendai in the Falling Walls Lab. competition in Sendai Tohoku University, Katahira, and hopefully to the finals in Berlin, including free return airfare.
/Contents and progress schedule of the class 1. Introduction. Background to the course.2. Group discussions of good and bad presentations.3. Mini lecture on how to increase thinking time during conversations. Explanation of your own research.4. Preparing an interesting Curriculum Vitae CV.5. VAK learning styles. Discussion of presentation ideas.6. Preparations to apply for the Falling Walls Lab. competition.7. Final preparation for the Falling Walls Lab. presentation.8. Presentation practice.Methods: Some formal instruction, but mostly interacting with other students to teach and learn from each other.
/Record and evaluation method Attendance, effort during lectures and performance of required tasks.
/Preparation Your life until now, and your specific field of research.
/Textbook and references As appropriate.
/self study As instructed.
/Notes Students on this course are usually from very different backgrounds. There will be some mini-lectures and hints on how to improve English skills, but mostly practice and learning will occur through interaction with other students including international students from other departments.
29
Sustainable Resource Management in Grassland and Forest
2
30
ABR-FOS501J
/Instructor
/Class subject Mechanisms of maintenance of species- and genetic diversity in forest ecosystems, and the ecosystem functions
/Object and summary of class Natural ecosystems such as forests, grasslands, rivers and the like are subject to various artificial influences by the primary production industry such as forestry, livestock industry and agriculture. Therefore, so-called biodiversity such as species diversity and genetic diversity is threatened. In the lesson, we will explain the maintenance mechanism of biodiversity in natural ecosystem. In addition, lecture based on latest knowledge on biodiversity function of substance production and environmental conservation in forest ecosystem
/Keywords Biodiversity, environmental conservation, substance production, gene analysis, beech forest, sugi plantations forest
/Goal of study . Understand the basic theory on forest ecology and the social background of research. Fost the ability to deeply think about the sustainability of forestry production
/Contents and progress schedule of the class 1. 1 Mechanisms of maintenance of species diversity in forest ecosystems 12. 2 Mechanisms of maintenance of species diversity in forest ecosystems 23. 1 Ecosystem functions in species rich forests 14. 2 Ecosystem functions in species rich forests 25. 3 Ecosystem functions in species rich forests 36. 1 Sustainable timber production in species rich forests 17. 2 Sustainable timber production in species rich forests 28. 3 Sustainable timber production in species rich forests 39. 1 Interrelationships between plants and fungi at the genetic level 110. 2 Interrelationships between plants and fungi at the genetic level 2
30
Sustainable Resource Management in Grassland and Forest
2
30
ABR-FOS501J
11. 3 Interrelationships between plants and fungi at the genetic level 312. 1 Elucidation of biodiversity maintenance mechanism by molecular ecological approach 113. 2 Elucidation of biodiversity maintenance mechanism by molecular ecological approach 214. 3 Elucidation of biodiversity maintenance mechanism by molecular ecological approach 315. 4 Elucidation of biodiversity maintenance mechanism by molecular ecological approach 4
/Record and evaluation method Attendance status and report. The report is a summary of lecture content plus detailed comment on the subject handled in the lecture.
/Preparation Biology/ecology and molecular biology in faculties.
/Textbook and references 2 DNA Coexistence in forests: Kenwa Kenji Tsukiji gakurakan, Tree says: Seiwa Kenji Tsukiji Bunkan,Molecular ecology of forest 2: Yoshihiko Tsumura, Yoshihisa Keiyama Fumiichi Shoten Publishing,A DNA book written by an ecologist: Hiroshi Inogi, Yoshihisa Keiyama Fumiichi Shoten Publishing
/self study
/Notes
31
The Science of Crop Production 2
30
ABR-PLA502J
/Instructor
/Class subject Learn how to read, write and statistical methods on topics of crop science
/Object and summary of class Using papers on crop science, lecture points to read.Let students actually write sentences and learn how to write sentences.Try statistical analysis using data.
/Keywords Article, reading, writing, statistics
/Goal of study Learn how to read subjects related to the field of crop science as subjects so that they can write themselves.Learn about statistical methods with reference to some cases.
/Contents and progress schedule of the class 1. Explanation of a paper in crop science Part12. Explanation of a paper in crop science Part23. Explanation of a paper in crop science Part34. Introduction of papers by students Part 15. Introduction of papers by students Part 26. How to write sentences related to crop science Part 17. How to write sentences related to crop science Part 28. How to write sentences related to crop science Part 39. Introduction of their study by students Part 110. Introduction of their study by students Part 211. Statistical method on crop science Part 112. Statistical method on crop science Part 2
32
The Science of Crop Production 2
30
ABR-PLA502J
13. Statistical method on crop science Part 314. Practice of statistics by students Part 115. Practice of statistics by students Part 2
/Record and evaluation method Comprehensively evaluate attendance status and task report and its presentation
/Preparation As session time is limited, self-directed learning is important. Practice what you do about your class content yourself.
/Textbook and references :Modern Statistics for the Life Sciences, Oxford
/self study As session time is limited, self-directed learning is important. Practice what you do about your class content yourself.
/Notes 18:00 Office hours are after class to 18:00. Students can also email their questions.E-mail address: [email protected]
33
The Science of Horticultural Production System
2
30
ABR-PLA503J
/Instructor
/Class subject Students learn advanced knowledge and ways of thinking concerning horticultural production system.
/Object and summary of class Students learn plant physiology, biochemistry, morphology, genetics, and molecular biology related to horticultural production system by presentations and discussions based on advanced expertise. In addition, students also learn stress biology related to horticultural production system using reference books.
/Keywords Horticultural science, quality, physiological disorder, environment temperature and light, physiology of flowering
/Goal of study Based on plant science, students understand advanced knowledge related to horticultural production system, and develop ways of thinking and scientific communication skills through discussion.
/Contents and progress schedule of the class 1. Introduction2. 1 Fruit quality-1 sugar3. 2 Fruit quality-2 vitamin4. 3 Fruit quality-3 amino acid5. 4 Fruit quality-4 mineral6. Fruit physiological disorder7. Vegetable quality8. Vegetative and reproductive growth of vegetable crops9. Vegetable production system plant factory10. Physiological disorder of vegetable crops11. Effect of temperature on floral plants
34
The Science of Horticultural Production System
2
30
ABR-PLA503J
12. Effect of light on floral plants13. Physiology of flowering14. Morphology of floral plants15. Summary
/Record and evaluation method Presentations, discussions, reports, and so on are evaluated.
/Preparation It is good to use horticulture-related textbooks to learn basic matters.
/Textbook and references Refernce book: Yoshinori Kanayama and Alexey Kochotov Editors, Abiotic Stress Biology in Horticultural Plants, Springer, 2015.
/self study To learn widely,students are expected to voluntarily use reference books.
/Notes 16:20 17:20 Office hours are from 16:20 to 17:20 on the day of the lecture in the laboratory of horticultural sciences. While in the office, questions are accepted at any time.E-mail address: [email protected]
35
The Science of Soil-Plant Interactions
2
30
ABR-AGC504J
/Instructor
/Class subject Properties, genesis, classification and utilization of world various soils
/Object and summary of class - -
Japan has steep landform and river, and is under humid climate, which causes rapid turnover of soil components and generates relatively young soil. World soil, however, has undergo long history, some of them has generated before Cambrian period. Various climate from tropical to frigid zone and from drying to humid gives various factor on soil genesis. Students learn outline of world soil type based on USDA soil taxonomy and introduce recent literature by themselves with discussion.
/Keywords Soil, pedogenic factor, soil genesis, soil classification, soil taxonomy
/Goal of study Students understand the outline of world soil resources including soil profile, physical and chemical properties, mineralogical components, soil genesis, classification and utilization.
/Contents and progress schedule of the class 1 FAO
Characteristic division and classification of world soil. Comparison of USDA soil taxonomy to
WRB of FAO soil classification. 2
Gelisol, Hisosol 3 AlFe AlFe Spodosol, Andisol 4
Oxisol, Vertisol 5
Aridisol, Ultisoil 6
Mollisol, Alfisol
36
The Science of Soil-Plant Interactions
2
30
ABR-AGC504J
7 Inceptisol, Entisol 8 Sustainable utilization and conservation of soil resources 9 12 Recent topics and introduction of publications with discussion
/Record and evaluation method A3 1 Evaluation is performed based attendance and introduction of literature.
/Preparation Students are required to prepare for class according to the purpose and contents of each classes.
/Textbook and references Pedogenesis and Soil Taxonomy, I, II,L.P. Wilding et al. , 1983, Elsevier.Soil Taxonomy, 2 , 1999. G.D. Smith Memorial Slide Collection, 1996 .
/self study
/Notes 1 12:00 14:00
2 e-mail address: @tohoku.ac.jp Office hours are for about 3hrs immediately after each class and an arbitral time. An appointment in
advance is highly recommended via email.
37
Genesis, Properties and Utilization of Volcanic Ash Soils
2
30
ABR-AGC505J
/Instructor
/Class subject Distinctive property of volcanic ash soil distributing in Japan and volcano area in the world.
/Object and summary of class
Volcanic ash soil has unique properties, such as active aluminum and iron, rich in humus, low bulk density, fragile soil clog and favorable physical property for plant growth. Students learn the unique properties and introduce recent literature on volcanic ash soil by themselves with group discussion.
/Keywords Volcanic ash soils, andosol, andisol, tephra
/Goal of study Students can understand current topics on volcanic ash soil including soil profile, genesis, classification, physical, chemical, mineralogical and biological properties and utilization.
/Contents and progress schedule of the class 1 Formation of volcano, distribution of volcano belt and volcanic ash soil in the world, concept
of volcanic soil 2 Feature of profile of volcanic ash soil 3 The influence of parent material, organisms, climate, human artificiality, topography and time
on the genesis of volcanic ash soils 4 -USDA Classification of volcanic ash soil in USDA soil taxonomy. 5 Al-
Lithologic character and mineral composition of volcanic ash, function and structures of
allophane, imogolite and Al-humus 6 Characterization of volcanic ash soil on element composition, inorganic and organic
components, and their chemical and physicochemical function. 7
Soil texture, structure, consistence, pore property and water holding property, bulk density,
irreversible change
38
Genesis, Properties and Utilization of Volcanic Ash Soils
2
30
ABR-AGC505J
8 Agriculture, crop productivity and optimal soil management on volcanic ash soil 9-11 1 Recent topics on volcanic ash soil in the world 12 2 Recent topics of Pinatubo volcano eruption in Philippine and its effect on agricultural soils. 13-15 Introduction of literature on volcanic ash soils by students with group discussion.
/Record and evaluation method A3 1 Evaluation is performed based attendance and introduction of literature.
/Preparation Students are required to prepare for classes according to the purpose and contents of each class.
/Textbook and references Volcanic Ash Soils -Genesis, Properties and Utilizaiton. Shoji, Nanzyo and Dahlgren , 1993
/self study Students are required to prepare for each class as well as to review each classes using handouts. When they cannot understand, they should ask after each classes.
/Notes 1 12:00 14:00
2 e-mail address: @tohoku.ac.jp Office hours are for about 3hrs immediately after each class and an arbitral time. An appointment in
advance is highly recommended via email.
39
Sustainable Environmental
Microbiology2
30
ABR-BOA506J
/Instructor
/Class subject Multilateral analysis of the relationship between pathogenic microorganisms and animals and humans
/Object and summary of class Although individuals and groups of animals are greatly affected by the presence of pathogenic microorganisms, human health is often harmed by microorganisms derived from animals. Understanding the relationship between pathogenic microorganisms and animals or humans in multidisciplinary understanding such as molecular biology, immunology, epidemiology, ecology.
/Keywords microorganisms, gene analysis, molecular epidemiology
/Goal of study To understand the propagation of pathogenic microorganisms in the environment, the detection technology of pathogenic microorganisms, and microorganism identification by gene analysis so that they can be utilized for research.
/Contents and progress schedule of the class 1. 1 Detection and identification of pathogenic microorganisms 12. 2 Detection and identification of pathogenic microorganisms 23. 3 Detection and identification of pathogenic microorganisms 34. 1 Pathogenic microorganisms in enviornment of animal production 15. 2 Pathogenic microorganisms in enviornment of animal production 26. 3 Pathogenic microorganisms in enviornment of animal production 37. 4 Pathogenic microorganisms in enviornment of animal production 48. 1 Propagation pattern of pathogenic microorganisms 19. 2 Propagation pattern of pathogenic microorganisms 210. 3 Propagation pattern of pathogenic microorganisms 311. 4 Propagation pattern of pathogenic microorganisms 4
40
Sustainable Environmental
Microbiology2
30
ABR-BOA506J
12. 1 Zoonosis113. 2 Zoonosis214. 3 Zoonosis315. 4 Zoonosis4
/Record and evaluation method
/Preparation 2005 1992 1989
/Textbook and references Brock Biology of Microorganisms. Madigan MT et al. eds., Prenticee-Hall, Inc., New Jersey 2006
/self study
/Notes [email protected]@tohoku.ac.jp
41
Advanced Animal Breeding and Genetics
2
ABR-ANS507J
/Instructor
/Class subject Genetic evaluation in livestock: Breeding value estimation
/Object and summary of class BLUP This course aims to learn about the theories of genetic evaluation in livestock mainly various selection index and BLUP methodologies. The contents include lectures by professors and presentations by students on topics in each class. Schedule are shown below, but subject to change depending on level of understanding.
/Keywords BLUP Genetic evaluation, Population genetics, Quantitative genetics, Linear mixed model, Selection index, Best linear unbiased prediction method
/Goal of study The goal of this course is to deepen understanding of theoretical procedures for breeding value estimation.
/Contents and progress schedule of the class 1. : Summary of theory for breeding value estimation2. Breeding objectives and genetic evaluation in livestock3. Genetic parameters for animal breeding: heritability and genetic correlation4. Linear algebra for breeding value estimation5. Breeding value estimation using selection index for single trait6. Breeding value estimation using selection index for multiple traits7. Selection index with constraint8. Genetic covariance between relatives9. BLUP Linear mixed model and mixed model equations BLUP method10. Accuracy of breeding value estimation11. BLUP BLUP of breeding values: Repeatability animal model12. BLUP BLUP of breeding values: Animal model with common environmental effects
42
Advanced Animal Breeding and Genetics
2
ABR-ANS507J
13. BLUP Multivariate animal model without missing records14. BLUP Multivariate animal model with missing records15. Maternal-trait animal model
/Record and evaluation method Evaluation is performed comprehensively based on attendance, some reports, and presentations.
/Preparation Students are required to understand basic linear algebra and statistics taught in the undergraduate program.
/Textbook and references Textbook: Linear models for the prediction of animal breeding values. R. A. Mrode, 2000 CABI Publishing, USA.References are provided, when needed.
/self study Students are required to prepare for the assigned part of the designated textbook for each class.
/Notes [email protected] [email protected] hours are anytime, but make an appointment in advance via e-mail.
43
Advanced Animal Physiology 2
ABR-ANS508J
/Instructor
/Class subject Research topics of animal physiology
/Object and summary of class This course aims to improve the students' ability to discuss their reserch issues by the presentation concerning to the latest literatures of ruminant phyusiology.
/Keywords animal physiology, topics, presentation
/Goal of study Students will develop the abilities necessary in academic research.
/Contents and progress schedule of the class This is a seminar style course intended to allow to students to have in-depth discussion conerning to literatures of animal physiology.
/Record and evaluation method Students are evaluated on submitted reports, their presentations and class participation.
/Preparation To understand the research content to be introduced sufficiently and to prepare a presentation file using appropriate expressions.
/Textbook and references Not particularly specified.
/self study It is important to acquire preliminary knouwledge to prepare for class by reading relevalent documents.
/Notes 1 E313 Office hours: Questions are accepted at any time.
2 E-mail: [email protected]
44
Aquatic Animal Physiology 2
ABR-APS510J
/Instructor
/Class subject Physiological function for reproduction and immunity in aquatic organisms
/Object and summary of class Outline of recent topics of reproduction and immunity in fish and marine invertebrates from point of view of comparative endocrinology and immunology
/Keywords Reproduction, endocrine system, innate immunity
/Goal of study Understanding of outline of physiological function of endogenous factors related to reproduction and immunity in aquatic organisms
/Contents and progress schedule of the class 1.
15 Discussion of the following topics based on the scientific papers Neuropeptide hormones2. Other neurohormones3. Steroid hormone4. Other hormones5. Receptor mechanism; central nervous system6. Receptor mechanism; Gonad7. Endocrine factors for reproduction8. Central nervous system and reproduction9. Endocrine control of reproduction10. Innate and acquired immunity in aquatic organisms11. Blood cell for innate immunity
45
Aquatic Animal Physiology 2
ABR-APS510J
12. Humoral factor for innate immunity13. Interaction between cellular and humoral factors in innate immunity14. Approach to environment science from reproductive endocrinology15. Approach to environment science from innate immunity
/Record and evaluation method The academic achievement will be evaluated by the understanding and discussion of each topic
/Preparation Reading papers provided in advance and related papers are strongly recommended before joining a class.
/Textbook and references Papers will be provided in advance.
/self study Preparation and review is strongly recommended.
/Notes 18:00-19:00http://www.agri.tohoku.ac.jp/zoshoku/index-j.htmlE-mail: [email protected] may visit the office or contact via Email [email protected] anytime.
46
Aquatic Animal Ecology 2
ABR-APS511J
/Instructor
/Class subject Marine ecology and biology of marine bio-resources
/Object and summary of class To understand the structure and the function of marine ecosystem and the biological processes of marine production, through reading the text book in turns.
/Keywords Coastal ecosystem, primary production, food web, food chain, inter-species interaction, community structure
/Goal of study Students learn about biological process of coastal marine ecosystem and its relation with food supply from marine waters.
/Contents and progress schedule of the class Estuarine ecosystems and their components, Coastal system of rocky shore Estuaries: Physical and biological prooertiesFate of macrophyte detritusEstuarine benthic systemsIntertidal rocky shoresSubtidal rocky shores
/Record and evaluation method Attendance, discussion and so on are evaluated.
/Preparation Students are required to prepare for the assigned part of the designated textbook for each class.
/Textbook and references Ecology of Coastal Waters: With Implications For Management by K.H.Mann
/self study Students are required to prepare for class according to the goal and contents of each class, and deepen knowledges on their own research subjects.
/Notes E-mail: [email protected]
47
Fisheries Ecology 2
ABR-APS512J
/Instructor
/Class subject Fluctuation pattern and mechanisms of marine fisheries population
/Object and summary of class 200 To understand population dynamics and fluctuation mechanism of fisheries population and bio-resource focusing on population ecology and biological traits of marine animal, through reading the text book in turns.
/Keywords Models of population dynamics, life historical traits, environmental fluctuation, regime-shift
/Goal of study Students learn about fluctuating pattern of aquatic animals inhabiting marine waters and fluctuation mechanisms of fisheries population its relation with biological and environmental factors and fisheries activity.
/Contents and progress schedule of the class 1-4 Marine ecology and production processes5-8 Fished species, life histories and distribution9-12 Population structure in space and time13-15 Stock assessment
/Record and evaluation method Attendance, discussion and so on are evaluated.
/Preparation Students are required to prepare for the assigned part of the designated textbook for each class.
/Textbook and references Marine Fisheries Ecology by S. Jennings et al.Regime Shift - Fish and Climate Change by T. Kawasaki19829
/self study Students are required to prepare for class according to the goal and contents of each class, and deepen knowledges on their own research subjects.
/Notes E-mail: [email protected]
48
Aquatic Plant Ecology 2
ABR-APS513J
/Instructor
/Class subject Structure and function of rocky subtidal ecosystem and phase shift
/Object and summary of class This course explains some rocky subtidal ecosystems with different species compositions and diversities for their future restorations.
/Keywords Rocky subtidal ecosystem. marine forest, barren, phase shift, sea urchin, grazing, ocean warming,
/Goal of study The purpose of this course is to help students better understand the mechanism of phase shift in rocky subtidal ecosystem.
/Contents and progress schedule of the class 1. Structure of rocky subtidal ecosystem2. Function of rocky subtidal ecosystem3. Outbreak of Isoyake4. Persistence of Isoyake5. Phase shift: hydrographic condition6. Phase shift: predator7. Phase shift: overfishing and hunting8. Phase shift: disease9. Effect of ocean warning10. Effect of ocean acidification11. Reading current paper in turns12. Reading current paper in turns
49
Aquatic Plant Ecology 2
ABR-APS513J
13. Reading current paper in turns14. Reading current paper in turns15. Reading current paper in turns
/Record and evaluation method Evaluation is performed based on understanding of paper and attendance.
/Preparation Students are required to read text book beforehand.
/Textbook and references 20082009Sea urchins: Biology and Ecology. J. M. Lawrence ed., 2013, Elsevier
/self study Students are required to collet information and topics related to the content of the class using other papers.
/Notes 1 16:00 18:00
2 http://www.agri.tohoku.ac.jp/algae/index-j.html3 e-mail: [email protected] Office hour: Monday 16:00-18:00 in Professor room of Lab of Marine Plant Ecology
50
Marine Biochemistry 2
ABR-APS514J
/Instructor
/Class subject To understand the characteristics, diversity and availability, effective methods for utilization of marine bioresources
/Object and summary of class In comparison with the terrestrial bioresources, attempts will be made to let the attendants understand the chemical and biochemical features of marine biorecources through reading recent scientific papers, reviews and books in the related field as well as discusion and presentation
/Keywords Marine bioresources, diversity, environmental adaptation, composition, effective utilization, biochemical properties, functional substances
/Goal of study To understand the uniqueness of aquatic organisms in diversity, compositional aspects, metabolism, and relationship with the quality as food, and also the effective utilization methods for marine bioresources
/Contents and progress schedule of the class 1 Part 1. About the characteristics of marine bioresournces with special reference to proteins
1 Proteins and amino acids 2 Unique proteins in aquatic animals 3 -1 Presentation of the assignments and discussion 4 -2 Presentation of the assignments and discussion 5 General discussion, report preparation
2 To understand the structure, metabolism, and pharmaceutical properties of marine lipids
6 Lipids and fatty acids 7 Lipids from aquatic organisms
51
Marine Biochemistry 2
ABR-APS514J
8 -1 Presentation of the assignments and discussion 9 -2 Presentation of the assignments and discussion 10 General discussion, report preparation
3
To understand the properties of enzymes, hormones, vitamines, etc. 11 Functional substances 12 Functional substances from aquatic organisms 13 -1 Presentation of the assignments and discussion 14 -2 Presentation of the assignments and discussion 15 General discussion, report preparation
/Record and evaluation method 30%20%50%Based on the performance and reports
/Preparation Read through the texts handed in advance and then attend the class after thinking about the problems
/Textbook and references R. A. Day, B. Gastel: How to Write and Publish a Scientific Paper, 7th Edition, Greenwood Press.N.F. Haard, B.K. Simpson: Seafood Enzymes, Marcel DekkerM. Sakaguchi: More Efficient Utilization of Fish and Fisheries Products, Elsevier
/self study Try to read more papers and deeply understand the content
/Notes Office hours After each class 12:00 13:00
Needs appointments [email protected] [email protected] [email protected] http://www.agri.tohoku.ac.jp/suika/index-j.html
52
Graduate Seminar in Resource and Environmental Economics1
1
30
ABR-AGE517J
/Instructor
/Class subject Understanding some issues on resource and environment economy and also learning methods of analysis on these issues
/Object and summary of class Every student is requested to give a presentation in the class once or twice per semester. When a student is appointed as a reporter, he or she must prepare a handout of report based on his or her own research topics and their related papers. Presentation is welcomed to have use of slides written by, for instance, Power-point program.
/Keywords Environmental Economics, Field Science and Technology for Society, International Development Studies, Agricultural Economics and Farm Management Science
/Goal of study Students are expected to understand some issues on resource and environment economy and to learn methods of analysis on these issues.
/Contents and progress schedule of the class Contents and progress schdule will be announced at the first class.
/Record and evaluation method 60% 40%Presentation 60% , Discussion 40%
/Preparation Every students must summarize existing studies on their own reseach topics to clarify importance of them.
/Textbook and references It will be announced at the first class.
/self study Please read recent papers on your own reserch topics.
/Notes : e-mail Office hour: Please make an appointment with each proffesor by e-mail. Please see URL given below. http://www.agri.tohoku.ac.jp/en/about/organization/graduate/index.html Our offices are located on the 2nd floor of Multidisciplinary Research Laboratory of Agricultural Science
K01 building in Aobayama Campus.
53
Graduate Seminar in Resource and Environmental Economics2
1
30
ABR-AGE518J
/Instructor
/Class subject Understanding some issues on resource and environment economy and also learning methods of analysis on these issues
/Object and summary of class Every student is requested to give a presentation in the class once or twice per semester. When a student is appointed as a reporter, he or she must prepare a handout of report based on his or her own research topics and their related papers. Presentation is welcomed to have use of slides written by, for instance, Power-point program.
/Keywords Environmental Economics, Field Science and Technology for Society, International Development Studies, Agricultural Economics and Farm Management Science
/Goal of study Students are expected to understand some issues on resource and environment economy and to learn methods of analysis on these issues.
/Contents and progress schedule of the class Contents and progress schdule will be announced at the first class.
/Record and evaluation method 60% 40%Presentation 60% , Discussion 40%
/Preparation Every students must summarize existing studies on their own reseach topics to clarify importance of them.
/Textbook and references It will be announced at the first class.
/self study Please read recent papers on your own reserch topics.
/Notes e-mail Office hour: Please make an appointment with each proffesor by e-mail. Please see URL given below. http://www.agri.tohoku.ac.jp/en/about/organization/graduate/index.html Our offices are located on the 2nd floor of Multidisciplinary Research Laboratory of Agricultural Science
K01 building in Aobayama Campus.
54
Advanced Environmental Economics
2
ABR-AGE519J
/Instructor
/Class subject environmental ethics, environmental economics
/Object and summary of class Understand the environment from the viewpoint of physicality and others.Consider not only the environmental problem solution by external observation but also how to coexist with human beings and the environment.Understand the environment from the viewpoint of physicality and otherness.In environmental economics, we discuss happiness, welfare and preference.
/Keywords sympathy, gaming, embodiment, alterrity, empathy, happiness, utility, welfare
/Goal of study In addition to the environmental view in the natural science and social science, from the viewpoint of "view of life", being able to be conscious of the relation between human vulnerability and the environment.Our targets are to understand what is well-being indicator, how difference are well-being and utility function by environmental economics.
/Contents and progress schedule of the class 1. Environment and ethics2. Ethics and Economics3. Responsibipity for future generation4. Responsibility for the natural world5. Anthropocentrism, Non-anthropocentrism6. Biocentrism7. Wilderness value of nature8. Conservation and preservation9. Deep ecology10. Social ecology11. Ecofeminism12. Environmental pragmatism13. Communityism14. Care for nature
55
Advanced Environmental Economics
2
ABR-AGE519J
15. Agriculture and ethics16. 1 Environmrntal evaluation and psychology 117. 2 Environmrntal evaluation and psychology 218. Evaluation and its bias19. Happiness20. 1 Subjective Happiness 121. 2 Subjective Happiness 222. Subjective happiness and utility function23. International comparison of happiness24. Regional comparison of happiness25. Pollution and happiness26. Happiness of non-human creatures27. 1 Animal welware 128. 2 Animal welware 229. 1 General discussion 130. 2 General discussion 2
/Record and evaluation method communication in the class, presentation
/Preparation desirable to complete environmental economicsdesirable to complete micro-economics
/Textbook and references Indicate in the first lecture time
/self study Students are required to collect information and topics related to the content of the class using newspapers and books.
/Notes at any time 13:00 14:00
56
Advanced Lecture on International Development Studies
2
ABR-AGE520E
/Instructor
/Class subject Economic development and agriculture
/Object and summary of class Main objective is to develop understanding of the agricultural transformation in developing Asia under the impacts of rapid economic growth, industrialization, urbanization, global warming, and globalization.
/Keywords economic growth, agriculture, market economy, capitalism, land ownership, trade
/Goal of study Students are expected to deepen their understanding on the difference of the social systems or institutions among countries and/or areas. Taking account into such diversified characteristics of economy and agriculture in developing Asian countries, students are expected to concert alternative models and policies as well as to review the general models and policies of development.
/Contents and progress schedule of the class 1. Introduction and briefing on a textbook adopted2. China's trade regime entering a new century3. China's grain trade4. Economic reform and the changing pattern of China's agricultural trade5. Trade liberalization and China's food econmy in the 21st century6. Implications of reform and WTO accession for China's agricultural policies7. Quotas and grain production in China8. Price linkages between Chinese and world grain markets9. Protection and comparative advantage of Chinese agriculture10. China's agricultural export and import behavior11. China's rural household purchasing decisions for high-valued food products12. Agricultural productivity growth in China13. Wheat genetic diversity in China14. Sources of growth and supply response15. Wrap-up discussion on the adopted text
/Record and evaluation method Presentation of textbook 50% , presentation of homework 30% , and discussion 20%
/Preparation Students need to learn basic Micro and Macro Economics prior to taking this course.
/Textbook and references It will be announced at the first class.In this year, we use textbooks about Chinese agricultural trade and policy.
/self study Every student is requested to give a presentation in the class once or twice per semester. When a student is appointed as a reporter, he or she must prepare a handout of report based on the assigned chapter of adopted textbook and its related papers.
/Notes Office hour: Please make an appointment with each professor by e-mail. FUYUKI e-mail: [email protected] office: E213TAKASHINO e-mail: [email protected] office: N209Our offices are located on the 2nd floor of Multidisciplinary Research Laboratory of Agricultural Science K01 building in Aobayama Campus.
57
Advanced lecture on Agricultural Economics & Farm Management
2
ABR-AGE521J
/Instructor
/Class subject
/Object and summary of class
/Keywords
/Goal of study
/Contents and progress schedule of the class 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. EU 15.
/Record and evaluation method
/Preparation
/Textbook and references Andrew Barkley and Paul Barkley 2013 Principles of Agricultural EconomicsRobert E. Evenson ed. 2007 Handbook of Agricultural Economics Vol. 3.
/self study
/Notes 1 2 3 E-mail: [email protected] [email protected] [email protected]
58
systematic Biology of Coastal
Genetic Resources2
30
ABR-APS522J
/Instructor
/Class subject Learning about evaluation methods and conservation of genetic diversity in marine organisms
/Object and summary of class To consider sustainable use and conservation of marine organisms,integrative understanding for genetics,ecology and evolutionary biology of marine organisms is required.The objective of this class is to learn aspects of genetic diversity and the conservation of marine organisms
/Keywords Genetic diversity, Phylogeography, Management unit, Population structure, Stock management
/Goal of study 1. 2. 1. To understand genetic diversity of marine organisms based on molecular ecological tools2. To cultivate global thinking about sustainable use for genetic diversity of marine organisms
/Contents and progress schedule of the class 1. I Genetic diversity IMeaning2. II 1 Genetic diversity IIMethods of evaluation-13. III 2 Genetic diversity IIIMethods of evaluation-24. IV 1 Genetic diversity IVMechanisms of maintaining-15. V 2 Genetic diversity VMechanisms of maintaining-26. I Consevation IPopulation structure7. II Conservation IIPhylogeography8. III Conservation IIIConservation unit9. IV Conservation IVViability10. I Artificial production I Stock management
59
systematic Biology of Coastal
Genetic Resources2
30
ABR-APS522J
11. II 1 Artificial production IIStock enhancementm-112. III 2 Artificial production IIIStock enhancement-213. IV Artificial production IVAquaculture14. V Artificial production: Genetic improvement15. Overview
/Record and evaluation method Students are evaluated on the final report.
/Preparation N/A
/Textbook and references N/A
/self study N/A
/Notes [email protected] are welcome after each lecture or via e-mail to the above address.
60
Advanced Lecture of Integrate Aquatic Biology
2
ABR-APS523J
/Instructor
/Class subject
/Object and summary of class
/Keywords
/Goal of study 1. 2.
/Contents and progress schedule of the class 1. 2. 3. 4. 5. 6. 7.
/Record and evaluation method
/Preparation
/Textbook and references - A.S, Pullin - J.C. Avise
/self study
/Notes [email protected]
61
Environmental Crop Science, Advanced Lecture
2
30
ABR-PLA524J
/Instructor
/Class subject
/Object and summary of class
/Keywords
/Goal of study
/Contents and progress schedule of the class
/Record and evaluation method
/Preparation
/Textbook and references
/self study
/Notes
62
Advanced Course for Remote
Sensing and GIS1
ABR-AGR525J
/Instructor
/Class subject Observation, survey, analysis and management of integrated field using spatial information science.
/Object and summary of class GIS The students will learn about analysis and management method of field survey data using GIS software. This course includes practical study using personal compoter and free software Quantum GIS.
/Keywords GISGeographical Information Science, Remote Sensing, Integrated Field
/Goal of study The porpose of this course is undestanding of geographical information science. The final goal of this course is to acquire ability to apply GIS to the integrated field science.
/Contents and progress schedule of the class 1. Spatial information and integrated field science2. Basic knowledge of spatial information science3. Preparing spatial data4. Visualization of spatial data5. Access to spatial data6. Spatial data in Japan7. Spatial data in the world8. Application of spatial data9. Spatial information in agricultural science10. -1 Practice of application of spatial data - 111. -2 Practice of application of spatial data - 212. -3 Practice of application of spatial data - 313. -4 Practice of application of spatial data - 4
63
Advanced Course for Remote
Sensing and GIS1
ABR-AGR525J
14. -5 Practice of application of spatial data - 515. -6 Practice of application of spatial data - 6
/Record and evaluation method 60%40%Students are evaluated on their points from attendance 60% and presentation or reports 40%
/Preparation Students are expected to review you learned read handout precisely. Preliminary knowledge is not necessary.
/Textbook and references Quantum GIS , 2011An Introduction to QGIS2nd edition H. Imaki and T. Okayasu, Kokon Shoin, 2015 Guidebook of application of spatial information technology for agricultural and environmental field National Institute for Agro-Environmental Sciences, 2011, in Japanese
/self study Self-study using handouts.
/Notes 1 11 12 2 3 2F N212
4 E-mail address: [email protected] Schedule will be informed via DCMail. The course wil be held on late November to December.2 This course includes practice using free GIS software, Quantum GIS. Students are expected to bring
their own personal computer. If it is impossible, notify the instructor in advance. 3 Office hours: by appointment. 4 E-mail address: [email protected]
64
Practice for Integrated Field Science 2
ABR-OAG526J
/Instructor
/Class subject Understanding and integration of production systems in complex ecological fields
/Object and summary of class In this course, students learn about specialized field researches on integrated ecosystems involving forests, mountainous regions, river planes, coastal regions. The aim of this course is to understand such integrated ecosystems from expanded perspective, and acqire the ability to conduct research works taking a comprehensive view.
/Keywords Arable land, Coast, Field science, Forest ecosystem, Grassland ecosystem, Integrated ecosystem, Livestock, Material recycling, Production system
/Goal of study The attainment of target of this course is to understand research works and agricultural production fields as broad, integrated ecosystems.
/Contents and progress schedule of the class 1. General outline and importance of biological production in integrated ecological fields2. 1 Forest ecology 13. 2 Forest ecology 24. Sustainable use of grasslands in a mountainous region5. Behavior, physiology and production of domestic herbivores6. 1 Environment of animal husbandry and material recycling 17. 2 Environment of animal husbandry and material recycling 28. - 1 Production and ecology of andosol in forest-grassland ecosystem 19. - 2 Production and ecology of andosol in forest-grassland ecosystem 210. 1 Physiology and production of paddy-field rice in river plane 111. 2 Physiology and production of paddy-field rice in river plane 2
65
Practice for Integrated Field Science 2
ABR-OAG526J
12. 1 Conservation and production in a coastal ecosystem 113. 2 Conservation and production in a coastal ecosystem 214. 1 Control of environment and production in an integrated ecological field 115. 2 Control of environment and production in an integrated ecological field 2
/Record and evaluation method : 12Evaluation is performed baesd on participation to classes and reports. 1 Each report should include summary of the class and own opinion, in addition to the content of discussion in the class. 2 Each student also must set a research topic by him/herself, explain current situation and problems in the utilization of an integrated ecosystem, and describe a research plan needed to solve it.
/Preparation
/Textbook and references Text will be delivered before or during each class.
/self study
/Notes 1 W311 022-757-4263
0229-84-7378 e-mail: [email protected] 2
3 1 Office hours: Anytime as needed, as E-mail: [email protected] Shin-ichiro OGURA, TEL 022-757-4263 [Sendai lab], Room W311; 0229-84-7378 [Kawatabi lab]. 2 This course is carried out in Kawatabi and Onagawa Field Science Center FSC. All the students of
this course stay FSC during the practice. Therefore, the students must attend a guidance of this course.3 Contents and progress schedule of the class may be changed.
66
Advanced topics in field science and technology for society
2
ABR-AGE527J
/Instructor
/Class subject This course deals with the knowledge and techniques for considering the problems of local communities and agriculture toward building a community where the environment and economy are compatible.
/Object and summary of class GISLCAIT The purpose of this course is to deepen understanding of the regional society and agriculture though participative study. The topics of this course are relationship between economic growth and the environment, GIS geographical information system, remote sensing, LCA life cycle assessment, ICT in agriculture.
/Keywords GISLCAIT GIS, Remote sensing, agricultural statistics, LCA, Environment conservation agricultural technology, ICT in agriculture
/Goal of study The goals of this course are to Consider regional agricultural problems as a view point of environment conservation agricultural
technology with spatial thinking Obtain basic knowledge and method for analyzing the current problem
/Contents and progress schedule of the class 1. Introduction of instructors2. GIS : Introduction to GIS C.YONEZAWA3. GIS : Acquisition of GIS data C.YONEZAWA4. GIS -1 : Visualization of GIS data-1 C.YONEZAWA5. GIS -2 : Visualization of GIS data-2 C.YONEZAWA6. GIS -3 : Visualization of GIS data-3 C.YONEZAWA7. : Acquisition of static data C.YONEZAWA8. : Visualization of static data using GIS C.YONEZAWA9. 1 Agricultural policies and environmental policies for rural communities - 1 Michiaki Omura
67
Advanced topics in field science and technology for society
2
ABR-AGE527J
10. 2 Agricultural policies and environmental policies for rural communities - 2 Michiaki Omura11. IT 1 Social implementation of IT agriculture - 1 Michiaki Omura12. IT 2 Social implementation of IT agriculture - 2 Michiaki Omura13. IT 2 Social implementation of IT agriculture - 3 Michiaki Omura14. IT 2 Social implementation of IT agriculture - 4 Michiaki Omura15. IT 2 Social implementation of IT agriculture - 5 Michiaki Omura
/Record and evaluation method Grading will be decided class attendance and attitude in class, reports and presentations.
/Preparation Students are expected to have basic knowledge on the current status and history of agriculture in Japan.
/Textbook and references No textbooks will be used.
/self study Students are expected to understand the subjects showed by keywords by related books.
/Notes PC [email protected] This course includes practice using free GIS software, Quantum GIS. C.YONEZAWAStudents are expected to bring their own personal computer. If it is impossib
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