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Kompleksnost živog svijeta

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Rast bioloških podataka

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Bill

ion

s Genomi

GenBank

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… i nove tehnologije

© Dang Ngo

Roche 454 10 - 30 Gigabytes

Illumina -Solexa 30 - 200 Gigabytes

ABI - SOLiD 50 – 1000 Gigabytes

Heliscope ?? Terabyte range

Pac Biosciences ?? Terabyte range

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Izrada prediktivnih modela

Prikupljanjepodataka

Analizapodataka

Izradamodela

Predviđanje

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Aplikacije

CPU MEM

‘bezobrazno’ paralelno

- BLAST

- HMM search

- BWA mapping

prostorno zahtjevno

- Genome assembly

- Graph-based

- Large dataset

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Some assembly required…

© Drew Sheneman

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Lobsang is a character in The Long Earth.

He is a Tibetan motorcycle repairman... who has been reincarnated as a supercomputer.

…He does have a sense of humour, as he frequently disguises himself as a soft drinks dispenser…

(http://wiki.lspace.org/mediawiki/Lobsang)

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Konfiguracija

• 18 blades, 36 Intel XEON CPUs, 216 cores

• 4.5 TB RAM divided across 36 CPUs (128GB RAM / CPU – DSM model)

• 40 TB storage space(700 MB/s throughput)

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Nekoliko detalja

• BLADE2 x CPU + 2 x local memory

• RACK 4 x IRUNUMAlink 6 interconnect

• IRUIndividual Rack Unit8 x Blade

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IRU iznutra

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Benchmark

1002,3

510,8

261,3

174,3134,9

74,2 53,9108,09212,67

414,58

621,35

809,78

1508,72

2081,77

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threads

MKL MATRIX MULTIPLICATION THREAD SCALING

runtime Gflop/s

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Lobsang i novinari

Petar Jager, pjager@bioinfo.hr

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Prvi rezultati

Nature2 x Cell2 x Nucleic Acids ResearchBioinformaticsPLoS One…

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Budućnost?

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Hvala!