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Kompleksnost živog svijeta
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Bill
ion
s Genomi
GenBank
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… i nove tehnologije
© Dang Ngo
Roche 454 10 - 30 Gigabytes
Illumina -Solexa 30 - 200 Gigabytes
ABI - SOLiD 50 – 1000 Gigabytes
Heliscope ?? Terabyte range
Pac Biosciences ?? Terabyte range
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Izrada prediktivnih modela
Prikupljanjepodataka
Analizapodataka
Izradamodela
Predviđanje
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Aplikacije
CPU MEM
‘bezobrazno’ paralelno
- BLAST
- HMM search
- BWA mapping
prostorno zahtjevno
- Genome assembly
- Graph-based
- Large dataset
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Some assembly required…
© Drew Sheneman
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Lobsang is a character in The Long Earth.
He is a Tibetan motorcycle repairman... who has been reincarnated as a supercomputer.
…He does have a sense of humour, as he frequently disguises himself as a soft drinks dispenser…
(http://wiki.lspace.org/mediawiki/Lobsang)
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Konfiguracija
• 18 blades, 36 Intel XEON CPUs, 216 cores
• 4.5 TB RAM divided across 36 CPUs (128GB RAM / CPU – DSM model)
• 40 TB storage space(700 MB/s throughput)
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Nekoliko detalja
• BLADE2 x CPU + 2 x local memory
• RACK 4 x IRUNUMAlink 6 interconnect
• IRUIndividual Rack Unit8 x Blade
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IRU iznutra
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Benchmark
1002,3
510,8
261,3
174,3134,9
74,2 53,9108,09212,67
414,58
621,35
809,78
1508,72
2081,77
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threads
MKL MATRIX MULTIPLICATION THREAD SCALING
runtime Gflop/s
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Prvi rezultati
Nature2 x Cell2 x Nucleic Acids ResearchBioinformaticsPLoS One…
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Budućnost?
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Hvala!