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Nukleotida.Ini adalah bahan kuliah tentang nukleotida. Silahkan didownload ya teman teman.
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PERAN NUKLEOTIDA : Membentuk DNA dan RNA Membentuk UDP-Glukose, CDP
Diacylglycerin , S-Adenosyl Methionin Membentuk energi : ATP dan GTP GTP Bagian dari enzym : NAD+ ,FAD dan Co-A Regulator metabolisme : cAMP dan
cGTP
INHIBITOR NUKLEOTIDA : Methotrexate (Analog asam
folat) menghambat pembentukan Desoxythymidylat (pembentuk DNA)
Azidothymidine (AZT) inhibitor proses reverse transcription
NUKLEOSIDA : Purine atau Pyrimidine yang terikat dengan Pentosa
NUKLEOTIDA : Ester Phosphat dari Nukleosida
Basa Purine utama : Adenine dan GuanineYang lain : Hypoxanthine dan Xanthine (zat intermediate dari metabolisme Adenine dan Guanine)
Basa Pyrimidine : Cytosine, Thymine, Uracil
Basa : Ribonukleosida : Ribonukleotida :Adenine (A) Adenosine Adenylat (AMP)Guanine (G) Guanosine Guanylat (GMP)Uracil (U) Uridine Uridylat (UMP) Cytosine (C) Cytidine Cytidylat
(CMP)
NC
C
CCN
N
NH
CH
NH2|
H
NC
C
CCN
N
NH
CH
O||
H
H2N
NC
C
CCNH
O
NH2|
H
H NC
C
CCNH
O
H
H
O|| CH3
NC
C
CCNH
O
O||
HH
H
adenineadenine guanineguanine
cytosinecytosine thyminethymine uraciluracil
Cincin Purine : Glycin, Glutamin, Aspartat Cincin Pyrimidine : Aspartat, Carbamoyl phosphat (Glutamin + HCO3)
Ribosephosphat yang menyusun Purine atau Pyrimidine berasal dari 5- Phosphoribosyl-1-Pyrophosphat (PRPP)
PRPP berasal dari ATP + Ribose 5- phosp.
Ribose 5 Phosphat berasal dari HMP shunt (PPC)
Purine dibentuk dari Asam Amino
Synthese Purine (de novo) : Glutamin Glutamat
PRPP 5 Phosphoribosyl-1Amin Enzym : Amido-Phosphoribosyl
transferase
Adenylosuccinat
ATP
10 Reaksi Inosinat (IMP)
Xanthylat GTP
Synthese Purine (Salvage Pathways) : PRPP Purin-ribonukleotida
Purine PPi Enzym : Adenin-Phosphoribosyl-
transferase Adenin + PRPP Adenylat + PPi
Enzym : Hypoxanthin-Guanin-Phosphoribosyl-transferase (HGPRT)
Hypoxanthin + PRPP Inosinat + PPi
Guanin + PRPP Guanylat + PPi
Inhibitor (feedback) : AMP, GMP dan IMP
Feedback Inhibition on Purine biosynthesis
Synthese Pyrimidine : Glutamin + 2 ATP + HCO-
3
2 ADP + Pi + Glutamat + Carbamoylphosphat
Carb. Ph.+ Aspartat N-Carbamoylaspartat N-Carb.aspartat Uridylat
(UMP)
CMP dibentuk dari proses aminasi terhadap UMP
Glutamin GlutamatUMP CMPATP + H2O ADP +Pi + 2H+
Proses methylasi terhadap dUMP TMP
Donor methyl : N5,N10 Methylentetrahydrofolat
Pada DNA tdk tdp Uracil tetapi Thymin Thymin dibentuk dari methylasi
terhadap Desoxyuridylat (dUMP) oleh enzim Thymidylat synthase
Donor grup Methyl : N5, N10- Methylentetrahydrofolat
Grup Methyl yang ditransfer dalam bentuk tereduksi, dimana 2 elektron untuk proses reduksinya berasal dari Unit H4-Folat sendiri dalam bentuk Hydrid-ion (H:-)
Ion ini menjadi bagian dari -CH3 yang ditransfer ke dTMP dan selanjutnya
H4-Folat Dihydrofolat. NAD+ : Tryptophan Nicotinat
(Niacin) + PRPP Nicotinatribonukleotida
FAD : Riboflavin + 2 ATP Co-A : Phosphorilasi terhadap
Pantothenat Pantothenic acid
Persamaan karakteristik ketiga reaksi tersebut (NAD, FAD dan Co-A): transfer AMP dari ATP thd grup Phosphat dari zat intermediate yang diphosphorilasi.
Pyrophosphat yang terbentuk dihydrolisa menjadi Orthophosphat.
Hal yang sering berulang dalam reaksi Biokimia : Reaksi biosynthese sering terjadi melalui hydrolysa Pyrophosphat yang dibebaskan.
Ribose-5 Phosphat PRPP
Phosphoribosyl-amin IMP
Adenylosuccinat AMP
IMP Xanthylat GMP
Feedback inhibition dari synthese Purin-nucleotide kontrol dari biosynthese Purin.
Synthese Purin-nucleotide dapat dihambat secara feedback pd bbrp tmpt.
1. Enzim 5 Phosphoribosyl-1-Pyrophosphat-synthetase yang diinhibisi oleh AMP, GMP, IMP mengatur konsentrasi PRPP.
2. Reaksi “kunci” untuk dimulainya proses biosynthese Purin (transfer dari gugus amido dari rantai samping Glutamin) oleh enzim Glutamin-PRPP-Amidotransferase dihambat oleh Purin-ribonucleotide.
Endproduct dari reaksi ini (AMP dan GMP) menghambat secara synergis.
3. AMP menghambat synthese Adenylosuccinat dari Inosinat, sedang GMP menghambat perobahan dari Inosinat menjadi Xanthylat.
4. GTP merupakan substrat dari synthese AMP dan ATP merupakan substrat dari synthese GMP.
Hubungan timbal balik substrat ini (Reciproke) memelihara produksi yang seimbang dari Adenin- dan Guanin-ribonucleotide.
Nucleotide intraselluler selalu dibentuk dan didegradasi secara kontinu.
Melalui enzim Nucleotidase dihydrolysa menjadi Nucleoside.
AMP dihydrolisa oleh enzim 5’-nucleotidase Adenosine dan oleh Adenosine deaminase Inosine
Purine -nucleoside-phosphorilase akan merobah Inosine, Guanosine dan Xanthosine menjadi Hypoxanthine, Guanine dan Xanthine dan juga Ribose1 Phosphat.
Ribosephosphat mutase merobahnya menjadi Ribose 5 Phosphat Synthese PRPP
Hypoxanthine Xanthine oleh enzim Xanthine oxidase (Mo,FAD dan Fe-S) dan selanjutnya oleh enzim Xanthine Oxidase menjadi Uric acid.
Guanine Xanthine (deaminasi oleh enzim Guanine deaminase.
Asam Urat dalam serum penumpukan kristal Natrium Urat di sendi-sendi Gout
Therapy : Allopurinol (analog Hypoxanthin), bekerja sebagi substrat dan kemudian inhibitor terhadap Xanthin-oxidase
Asam Urat : anti oxidant
Adenosine deaminase deficiency Immunodeficiency
Konsentrasi dATP yang tinggi menghambat Ribonucleotide reductase
sinthesa DNA dihambat Gangguan fungsi T- dan B-cells Purine nucleoside phosphorylase def.
level purine nucleotida meningkat dan sinthesa Uric acid menurun.
Katabolisme Pyrimidine : dTMP 2’-Deoxythymidine Thymine
Dihydrothymine β-Ureidoisobutyrate -Aminoisobutyrate
Transaminasi Methylmalonatsemialdehyd
Methylmalonyl-CoA Succinyl-CoA Cytidine dan dCMP Uracil
Dihydrouracil β-Alanine. β-Alanine Acetyl-CoA
Digestion of dietary Nucleic acids
Enzim Nuclease (DNAase dan RNAase) : Nucleic acids Oligonucleotides
Enzim Phosphodiesterase : Oligonucleotides Mononucleotides
Enzim Nucleotidase : Nucleotides Nucleosides (Phosphat dipisahkan)
Enzim Nucleosidase : Free bases and Ribose or Deoxyribose which are then absorbed
Dietary purine and pyrimidine bases degraded within enterocytes.
Gouty arthritis
The inflammation caused by urate crystals deposition attracts white blood cells, which engulf the crystals
Urate crystals disrupt the lysosomal membranes in the white blood cells
Result : the leakage of lysosomal enzymes into the tissues
Visible structure called “tophi” (urate crystal stones) may form near joints and cause deformities
Gouty arthritis
There are two forms of Gout : Primary and Secondary
Primary : genetic defects in purine metabolism Several variants of Ribose 5-phosphate
pyrophosphokinase are not effectively regulated by allosteric inhibitors e.g., Pi, GDP or ADP
Consequently PRPP consentration rise, causing the increased synthesis of purine nucleotides.
This leads to increased uric acid synthesis
Gouty arthritis
HGPRT deficiency causes Hyperuricemia because of decreased Salvage of purine bases.
In Glucose 6-phosphatase deficiency, hypoglycemia develops in affected individuals because they cannot produce blood glucose from glucose 6-phosphate.
High liver concentrations of Glucose 6-phosphate stimulate the synthesis of Ribose 5-phosphate and PRPP
Gouty arthritis
Secondary : Leukemia patients overproduce uric acid either because of massive cell destruction or the chemotherapy treatment.
Hyperuricemia also results when certain drugs interfere with the renal secretion of uric acid.
Lead poisoning also develop gout because of renal damage.
Saturnine Gout : Port wines (Lead salts were added to give very effective preservatives) and Rum (stored in containers lined with lead)
Lesch Nyhan Syndrome :Deficiency of HGPRT Excessive production of uric acidCertain neurological symptoms (self-
mutilation, aggressive, involuntary movement and mental retardation)
Affected children appear normal at birth but begin to deteriorate at about 3 to 4 months of age
Lesch Nyhan Syndrome :The severe symptoms of hereditary HGPRT
deficiency indicate that the purine salvage pathway is vitally important.
Purine nucleotide synthesis inhibitors for treating cancer indicate that both pathways must be inhibited for significant tumor growth suppression
Therapy Cancer : block terhadap enzym Thymidylat synthase (Fluorouracil)
Enzym Dihydrofolat reduktase (Aminopterin dan Methotrexate, yaitu analog Dihydrofolat)
Toxis terhadap : Stemcell (BM), Epithel GIT dan Follikel rambut.