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Prof. Dr. Axel A. Brakhage Phone: +49 3641 532-1000 Email: [email protected] Website: www.leibniz- hki.de/en/molekulare-und-angewandte-mikrobiol Projects Current Projects Oxidative inactivation of primary metabolism pathways in the human pathogenic fungus Aspergillus fumigatus Details N.N. 2 Details Discovery of new antifungal compounds from the social amoeba Dictyostelium discoideum Details New antifungal compounds Details The impact of redox regulation on the stress response of Aspergillus fumigatus and its role in host-pathogen interaction Details Communication via extracellular vesicles between immune cells and the human-pathogenic fungus

Prof. Dr. Axel A. Brakhage

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Prof. Dr. Axel A. Brakhage

Phone: +49 3641 532-1000 Email: [email protected] Website: www.leibniz-hki.de/en/molekulare-und-angewandte-mikrobiol

ProjectsCurrent Projects

Oxidative inactivation of primary metabolism pathways in the human pathogenic fungus AspergillusfumigatusDetails

N.N. 2Details

Discovery of new antifungal compounds from the social amoeba Dictyostelium discoideumDetails

New antifungal compoundsDetails

The impact of redox regulation on the stress response of Aspergillus fumigatus and its role in host-pathogeninteractionDetails

Communication via extracellular vesicles between immune cells and the human-pathogenic fungus

Aspergillus fumigatusDetails

Mechanisms of microbial communication leading to activation of silent gene clustersDetails

N. N. 7Details

N.N.Details

Molecular Mechanisms of lipid raft formationDetails

Communication between bacteria and fungi by secondary metabolitesDetails

Former Projects

Acute and chronic Aspergillus infection in mice studied by PET-CT and comparative gene expressionDetails

Lysine biosynthesis in Aspergillus fumigatusDetails

Post-translational modifications and pathogenicity of the human pathogenic fungus Aspergillus fumigatusDetails

Cryo-stress of filamentous fungiDetails

Secretome analysis/pathogenicity mechanisms of Arthroderma benhamiaeDetails

Prediction of gene regulatory networks involved in the differentiation, secondary metabolism and crosstalk of Aspergillus nidulansDetails

Regulation of cell wall integrity signalling by mitogen-activated protein kinase MpkA in AspergillusfumigatusDetails

The hypoxic (low-oxygen) response of the pathogenic mould Aspergillus fumigatus and its relevance topathogenicityDetails

The genome of the endofungal bacterium Burkholderia rhizoxinicaDetails

Bioinformatic investigation and prediction of gene regulatory elements in pathogenic fungiDetails

Integrated genome-wide data analysis by ensemble learning methods to understand infection processesDetails

Identification of immunogenic components of Aspergillus fumigatus for vaccine developmentDetails

Identifying the pulmonary phagocytic network of mice infected with Aspergillus fumigatusDetails

A surface hydrophobin in ectomycorrhiza interactionDetails

Molecular mechanisms of the interaction between Aspergillus fumigatus and alveolar macrophagesDetails

Novel molecular mechanisms of iron sensing and homeostasis in Aspergillus fumigatusDetails

Functionality and plasticity of bacterial polyketide synthasesDetails

The role of virulence determinants of the human pathogenic fungus Aspergillus fumigatus in the defenseagainst fungivorous amoebaDetails

Heterologous expression of silent gene clusters in fungiDetails

Developing molecular tools for the de novo assembling of biosynthetic routesDetails

Development of a user-friendly heterologous expression system and its applications for natural productbiosynthesisDetails

Adhäsionsmechanismen von Escherichia coli auf TitanoberflächenDetails

Publications

Horn F, Habel A, Scharf DH, Dworschak J, Brakhage AA, Guthke R, Hertweck C, Linde J (2015) DraftGenome Sequence and Gene Annotation of the Entomopathogenic Fungus Verticillium hemipterigenum. Genome Announc 3(1), Details PubMed

Horn F, Linde J, Mattern DJ, Walther G, Guthke R, Brakhage AA, Valiante V (2015) Draft GenomeSequence of the Fungus Penicillium brasilianum MG11. Genome Announc 3(5), Details PubMed

Macheleidt J, Scherlach K, Neuwirth T, Schmidt-Heck W, Straßburger M, Spraker J, Baccile JA,Schroeder FC, Keller NP, Hertweck C, Heinekamp T, Brakhage AA (2015) Transcriptome analysis of

cyclic AMP-dependent protein kinase A-regulated genes reveals the production of the novel naturalcompound fumipyrrole by Aspergillus fumigatus. Mol Microbiol 96(1), 148-162. Details PubMed

Netzker T, Fischer J, Weber J, Mattern DJ, König CC, Valiante V, Schroeckh V, Brakhage AA (2015) Microbial communication leading to the activation of silent fungal secondary metabolite gene clusters. Front Microbiol 6, 299. Details PubMed

Horn F, Schroeckh V, Netzker T, Guthke R, Brakhage AA, Linde J (2014) Draft Genome Sequence of Streptomyces iranensis. Genome Announc 2(4), Details PubMed

Lapp K, Vödisch M, Kroll K, Strassburger M, Kniemeyer O, Heinekamp T, Brakhage AA (2014) Characterization of the Aspergillus fumigatus detoxification systems for reactive nitrogen intermediatesand their impact on virulence. Front Microbiol 5, 469. Details PubMed

König CC, Scherlach K, Schroeckh V, Horn F, Nietzsche S, Brakhage AA, Hertweck C (2013) Bacterium induces cryptic meroterpenoid pathway in the pathogenic fungus Aspergillus fumigatus. Chembiochem 14(8), 938-942. Details PubMed

Nützmann HW, Fischer J, Scherlach K, Hertweck C, Brakhage AA (2013) Distinct amino acids ofhistone H3 control secondary metabolism in Aspergillus nidulans. Appl Environ Microbiol 79(19),6102-6109. Details PubMed

Shopova I, Bruns S, Thywissen A, Kniemeyer O, Brakhage AA, Hillmann F (2013) Extrinsicextracellular DNA leads to biofilm formation and colocalizes with matrix polysaccharides in the humanpathogenic fungus Aspergillus fumigatus. Front Microbiol 4, 141. Details PubMed

Heddergott C, Bruns S, Nietzsche S, Leonhardt I, Kurzai O, Kniemeyer O, Brakhage AA (2012) The Arthroderma benhamiae hydrophobin HypA mediates hydrophobicity and influences recognition byhuman immune effector cells. Eukaryot Cell 11(5), 673-682. Details PubMed

Heinekamp T, Thywißen A, Macheleidt J, Keller S, Valiante V, Brakhage AA (2012) Aspergillusfumigatus melanins: interference with the host endocytosis pathway and impact on virulence. FrontMicrobiol 3, 440. Details PubMed

Horn F, Heinekamp T, Kniemeyer O, Pollmächer J, Valiante V, Brakhage AA (2012) Systems biology offungal infection. Front Microbiol 3, 108. Details PubMed

Müller S, Baldin C, Groth M, Guthke R, Kniemeyer O, Brakhage AA, Valiante V (2012) Comparison oftranscriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into thegenome and MpkA dependent gene expression. BMC Genomics 13, 519. Details PubMed

Sarkar A, Funk AN, Scherlach K, Horn F, Schroeckh V, Chankhamjon P, Westermann M, Roth M,Brakhage AA, Hertweck C, Horn U (2012) Differential expression of silent polyketide biosynthesis geneclusters in chemostat cultures of Aspergillus nidulans. J Biotechnol 160(1-2), 64-71. Details PubMed

Wallwey C, Heddergott C, Xie X, Brakhage AA, Li SM (2012) Genome mining reveals the presence of aconserved gene cluster for the biosynthesis of ergot alkaloid precursors in the fungal familyArthrodermataceae. Microbiology 158(Pt 6), 1634-1644. Details PubMed

Albrecht D, Kniemeyer O, Mech F, Gunzer M, Brakhage A, Guthke R (2011) On the way towardsystems biology of Aspergillus fumigatus infection. Int J Med Microbiol 301(5), 453-459. Details PubMed

Burmester A, Shelest E, Glöckner G, Heddergott C, Schindler S, Staib P, Heidel A, Felder M, Petzold A,Szafranski K, Feuermann M, Pedruzzi I, Priebe S, Groth M, Winkler R, Li W, Kniemeyer O, SchroeckhV, Hertweck C, Hube B, White TC, Platzer M, Guthke R, Heitman J, Wöstemeyer J, Zipfel PF, MonodM, Brakhage AA (2011) Comparative and functional genomics provide insights into the pathogenicity ofdermatophytic fungi. Genome Biol 12(1), R7. Details PubMed

Jain R, Valiante V, Remme N, Docimo T, Heinekamp T, Hertweck C, Gershenzon J, Haas H, BrakhageAA (2011) The MAP kinase MpkA controls cell wall integrity, oxidative stress response, gliotoxinproduction and iron adaptation in Aspergillus fumigatus. Mol Microbiol 82(1), 39-53. Details PubMed

Mech F, Thywissen A, Guthke R, Brakhage AA, Figge MT (2011) Automated image analysis of the host-pathogen interaction between phagocytes and Aspergillus fumigatus. PLoS One 6(5), e19591. Details PubMed

Nützmann HW, Reyes-Dominguez Y, Scherlach K, Schroeckh V, Horn F, Gacek A, Schümann J,Hertweck C, Strauss J, Brakhage AA (2011) Bacteria-induced natural product formation in the fungusAspergillus nidulans requires Saga/Ada-mediated histone acetylation. Proc Natl Acad Sci U S A 108(34),14282-14287. Details PubMed

Priebe S, Linde J, Albrecht D, Guthke R, Brakhage AA (2011) FungiFun: a web-based application forfunctional categorization of fungal genes and proteins. Fungal Genet Biol 48(4), 353-358. Details PubMed

Thywißen A, Heinekamp T, Dahse HM, Schmaler-Ripcke J, Nietzsche S, Zipfel PF, Brakhage AA (2011) Conidial Dihydroxynaphthalene Melanin of the Human Pathogenic Fungus Aspergillus fumigatusInterferes with the Host Endocytosis Pathway. Front Microbiol 2, 96. Details PubMed

Volling K, Thywissen A, Brakhage AA, Saluz HP (2011) Phagocytosis of melanized Aspergillus conidiaby macrophages exerts cytoprotective effects by sustained PI3K/Akt signalling. Cell Microbiol 13(8),1130-1148. Details PubMed

Bruns S, Kniemeyer O, Hasenberg M, Aimanianda V, Nietzsche S, Thywissen A, Jeron A, Latgé JP,Brakhage AA, Gunzer M (2010) Production of extracellular traps against Aspergillus fumigatus in vitro andin infected lung tissue is dependent on invading neutrophils and influenced by hydrophobin RodA. PLoSPathog 6(4), e1000873. Details PubMed

Bruns S, Seidler M, Albrecht D, Salvenmoser S, Remme N, Hertweck C, Brakhage AA, Kniemeyer O,Müller FM (2010) Functional genomic profiling of Aspergillus fumigatus biofilm reveals enhancedproduction of the mycotoxin gliotoxin. Proteomics 10(17), 3097-3107. Details PubMed

Teutschbein J, Albrecht D, Pötsch M, Guthke R, Aimanianda V, Clavaud C, Latgé JP, Brakhage AA,Kniemeyer O (2010) Proteome profiling and functional classification of intracellular proteins fromconidia of the human-pathogenic mold Aspergillus fumigatus. J Proteome Res 9(7), 3427-3442. Details PubMed

Valiante V, Jain R, Heinekamp T, Brakhage AA (2009) The MpkA MAP kinase module regulates cellwall integrity signaling and pyomelanin formation in Aspergillus fumigatus. Fungal Genet Biol 46(12),909-918. Details PubMed

Vödisch M, Albrecht D, Lessing F, Schmidt AD, Winkler R, Guthke R, Brakhage AA, Kniemeyer O (2009) Two-dimensional proteome reference maps for the human pathogenic filamentous fungus Aspergillus fumigatus. Proteomics 9(5), 1407-1415. Details PubMed

Albrecht D, Kniemeyer O, Brakhage AA, Guthke R (2008) Normalisation of 2D DIGE data - on the wayto a standard operating procedure. BIRD08 Schriftenreihe Informatik 26, 55-64. Details

Valiante V, Heinekamp T, Jain R, Härtl A, Brakhage AA (2008) The mitogen-activated protein kinaseMpkA of Aspergillus fumigatus regulates cell wall signaling and oxidative stress response. Fungal GenetBiol 45(5), 618-627. Details PubMed

Guthke R, Kniemeyer O, Albrecht D, Brakhage AA, Moeller U (2007) Discovery of gene regulatorynetworks in Aspergillus fumigatus. Lect Notes Bioinf 4366, 22-41. Details

Schöbel F, Ibrahim-Granet O, Avé P, Latgé JP, Brakhage AA, Brock M (2007) Aspergillus fumigatusdoes not require fatty acid metabolism via isocitrate lyase for development of invasive aspergillosis. InfectImmun 75(3), 1237-1244. Details PubMed

Volling K, Brakhage AA, Saluz HP (2007) Apoptosis inhibition of alveolar macrophages upon interactionwith conidia of Aspergillus fumigatus. FEMS Microbiol Lett 275(2), 250-254. Details PubMed

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