UGENE Workflow Designer.

Flexible control and extension of

pipelines with scripts

Yeah! I’ve come up

with a new tool

Ooh… It’s already there

Hey! I need all the tools.

• Multiple Alignment: MUSCLE, Kalign, Clustal, Mafft, T-Coffee

• Ultra fast repeat finder

• HMMER, ORF Finder, Restriction sites

• Remote databases queries (BLAST, CDD, DAS, etc.)

• Phylogenetic trees • TFBSs • >20 data formats

On local machine

Share files with schemes

Imports data to internal DB

Or passes file URLs

Extension with external instruments

Implemented in C

Let users setup and run workflows

Extended for Python