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Ген - ориентированные базы данных и геномные браузеры. Что такое ген-ориентированные базы данных ? Самые простые примеры таких БД Примеры геном-ориентированных баз данных и геномные браузеры Human Genome Browser. Что такое ген-ориентированные базы данных ?. - PowerPoint PPT Presentation
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- - ? - Human Genome Browser
- ? ( ) , ,
Gene Entrez ( LocusLink) NCBI , /
DUT
:BibliographyRelated Articles in PubMedGeneRIFs: Gene References Into FunctionInteractionsGeneral gene informationMarkersGenotypesPathwaysHomologyGeneOntologyGeneral protein information (Names, ECs, ACs)NCBI Reference Sequences (RefSeq) mRNAs and proteinsReference assembly + Alternate assembly: GenomicRelated Sequences (links between ACs of different types)Additional Links (OMIM, PharmGKB, HRDP, UniGene)
MapViewer
(comparative genomics) ,
NCBI -> Genomic Biology (http://www.ncbi.nlm.nih.gov/Genomes/)
http://www.ncbi.nlm.nih.gov/genomes/VIRUSES/viruses.html ( )
HIV2
Sequence Viewer
Protein coding genes link
gMap (comparative genomics)Zoom in, zoom-out (!) !
NCBITools legend:T - TaxMap;P - ProtTable;C - COG Table;D - 3-D neighbors;L - BLAST;S - CDD search;G - GenePlot;X - TaxPlot;M - gMap;F - FTP;R - Publications
COG Table
COG Table (Overview)
TaxMap , BLAST- Click
Genomes in progress
TIGR Comprehensive Microbial Resources , http://cmr.tigr.org/tigr-scripts/CMR/CmrHomePage.cgi
TIGR
NCBI Map Viewer, FTP , , MapViewer LocusLink
Human :Ensembl (http://www.ensembl.org) EBI & Sanger Institute, IDs, 35 Human Genome Browser (http://genome.ucsc.edu/) UCSC, USA GenBank IDs, 41
EnsemblEnsembl Tutorials and Worked Examples: http://www.ensembl.org/info/helpdesk/tutorials/index.html
Human Genome BrowserRefSeq IDChr BandGene nameCoords
DUT gene (dUTPAse)
RefSeq
Provided tracks (types)
Custom Track : - Upload BED, GFF, GTF, WIG PSL :.,chr11500319498name11+chr15895459871name21+chr1321669332669name31-
?
BLATBLAT = BLAST , -
Table Browser